- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-octamer
- Ligands
- 8 x MG: MAGNESIUM ION(Non-covalent)
- 8 x APG: ATROLACTIC ACID (2-PHENYL-LACTIC ACID)(Covalent)
APG.2: 13 residues within 4Å:- Chain A: F.50, Y.52, S.137, K.162, K.164, D.193, N.195, E.219, E.245, H.295, E.315, L.317
- Ligands: MG.1
13 PLIP interactions:13 interactions with chain A- Hydrophobic interactions: A:F.50, A:Y.52, A:K.164, A:L.317
- Hydrogen bonds: A:S.137, A:K.164, A:N.195, A:E.245, A:E.245
- Salt bridges: A:K.162, A:K.164, A:H.295
- pi-Stacking: A:H.295
APG.4: 13 residues within 4Å:- Chain B: F.50, Y.52, S.137, K.162, K.164, D.193, N.195, E.219, E.245, H.295, E.315, L.317
- Ligands: MG.3
13 PLIP interactions:13 interactions with chain B- Hydrophobic interactions: B:F.50, B:Y.52, B:K.164, B:L.317
- Hydrogen bonds: B:S.137, B:K.164, B:N.195, B:E.245, B:E.245
- Salt bridges: B:K.162, B:K.164, B:H.295
- pi-Stacking: B:H.295
APG.6: 13 residues within 4Å:- Chain C: F.50, Y.52, S.137, K.162, K.164, D.193, N.195, E.219, E.245, H.295, E.315, L.317
- Ligands: MG.5
13 PLIP interactions:13 interactions with chain C- Hydrophobic interactions: C:F.50, C:Y.52, C:K.164, C:L.317
- Hydrogen bonds: C:S.137, C:K.164, C:N.195, C:E.245, C:E.245
- Salt bridges: C:K.162, C:K.164, C:H.295
- pi-Stacking: C:H.295
APG.8: 13 residues within 4Å:- Chain D: F.50, Y.52, S.137, K.162, K.164, D.193, N.195, E.219, E.245, H.295, E.315, L.317
- Ligands: MG.7
13 PLIP interactions:13 interactions with chain D- Hydrophobic interactions: D:F.50, D:Y.52, D:K.164, D:L.317
- Hydrogen bonds: D:S.137, D:K.164, D:N.195, D:E.245, D:E.245
- Salt bridges: D:K.162, D:K.164, D:H.295
- pi-Stacking: D:H.295
APG.10: 13 residues within 4Å:- Chain E: F.50, Y.52, S.137, K.162, K.164, D.193, N.195, E.219, E.245, H.295, E.315, L.317
- Ligands: MG.9
14 PLIP interactions:14 interactions with chain E- Hydrophobic interactions: E:F.50, E:Y.52, E:K.164, E:L.317
- Hydrogen bonds: E:S.137, E:N.195, E:E.245, E:E.245
- Water bridges: E:K.164, E:E.219
- Salt bridges: E:K.162, E:K.164, E:H.295
- pi-Stacking: E:H.295
APG.12: 13 residues within 4Å:- Chain F: F.50, Y.52, S.137, K.162, K.164, D.193, N.195, E.219, E.245, H.295, E.315, L.317
- Ligands: MG.11
14 PLIP interactions:14 interactions with chain F- Hydrophobic interactions: F:F.50, F:Y.52, F:K.164, F:L.317
- Hydrogen bonds: F:S.137, F:N.195, F:E.245, F:E.245
- Water bridges: F:K.164, F:E.219
- Salt bridges: F:K.162, F:K.164, F:H.295
- pi-Stacking: F:H.295
APG.14: 13 residues within 4Å:- Chain G: F.50, Y.52, S.137, K.162, K.164, D.193, N.195, E.219, E.245, H.295, E.315, L.317
- Ligands: MG.13
14 PLIP interactions:14 interactions with chain G- Hydrophobic interactions: G:F.50, G:Y.52, G:K.164, G:L.317
- Hydrogen bonds: G:S.137, G:N.195, G:E.245, G:E.245
- Water bridges: G:K.164, G:E.219
- Salt bridges: G:K.162, G:K.164, G:H.295
- pi-Stacking: G:H.295
APG.16: 13 residues within 4Å:- Chain H: F.50, Y.52, S.137, K.162, K.164, D.193, N.195, E.219, E.245, H.295, E.315, L.317
- Ligands: MG.15
14 PLIP interactions:14 interactions with chain H- Hydrophobic interactions: H:F.50, H:Y.52, H:K.164, H:L.317
- Hydrogen bonds: H:S.137, H:N.195, H:E.245, H:E.245
- Water bridges: H:K.164, H:E.219
- Salt bridges: H:K.162, H:K.164, H:H.295
- pi-Stacking: H:H.295
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Landro, J.A. et al., The role of lysine 166 in the mechanism of mandelate racemase from Pseudomonas putida: mechanistic and crystallographic evidence for stereospecific alkylation by (R)-alpha-phenylglycidate. Biochemistry (1994)
- Release Date
- 1993-10-31
- Peptides
- MANDELATE RACEMASE: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
AG
AH
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-octamer
- Ligands
- 8 x MG: MAGNESIUM ION(Non-covalent)
- 8 x APG: ATROLACTIC ACID (2-PHENYL-LACTIC ACID)(Covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Landro, J.A. et al., The role of lysine 166 in the mechanism of mandelate racemase from Pseudomonas putida: mechanistic and crystallographic evidence for stereospecific alkylation by (R)-alpha-phenylglycidate. Biochemistry (1994)
- Release Date
- 1993-10-31
- Peptides
- MANDELATE RACEMASE: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
AG
AH
A