SMTL ID : 1mow.2 (3 other biounits)

E-DreI

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

3 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 10 residues within 4Å: Chain A: A.14, G.15 Chain B: A.13, G.14 Chain C: G.20, D.21, G.116, D.117 Ligands: MG.4, MG.5 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:D.21, C:D.117 MG.4: 5 residues within 4Å: Chain A: A.14 Chain B: G.14 Chain C: D.21, G.116 Ligands: MG.1 5 PLIP interactions: 3 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:D.21, C:D.21, C:G.116, H2O.4, H2O.7 MG.5: 6 residues within 4Å: Chain A: G.15 Chain B: G.12, A.13 Chain C: G.20, D.117 Ligands: MG.1 4 PLIP interactions: 3 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:G.20, C:D.117, C:D.117, H2O.4

9 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 3 residues within 4Å: Chain A: C.1, C.2 Chain C: S.129 1 PLIP interactions: 1 interactions with chain C Water bridges: C:S.129 GOL.3: 4 residues within 4Å: Chain A: C.12, A.13 Chain B: T.11, G.12 No protein-ligand interaction detected (PLIP) GOL.10: 4 residues within 4Å: Chain C: D.227, R.238, T.241, E.243 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:D.227, C:R.238, C:T.241, C:T.241 Water bridges: C:S.242 GOL.11: 4 residues within 4Å: Chain C: W.19, L.24, L.95, R.148 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:I.18, C:R.148, C:R.148 Water bridges: C:L.24 GOL.12: 2 residues within 4Å: Chain C: E.5 Ligands: GOL.14 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:E.5 Water bridges: C:E.5, C:E.5 GOL.13: 8 residues within 4Å: Chain C: E.5, G.9, I.10, Y.13, R.55, A.108, F.191, N.193 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:E.5, C:F.191, C:N.193 Water bridges: C:R.55 GOL.14: 7 residues within 4Å: Chain C: E.5, Q.50, F.51, R.55, N.193 Ligands: GOL.12, GOL.15 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:Q.50, C:R.55, C:R.55 Water bridges: C:E.5 GOL.15: 5 residues within 4Å: Chain C: E.5, P.54, R.55, F.58 Ligands: GOL.14 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:E.5, C:F.58 GOL.16: 2 residues within 4Å: Chain C: K.85, Y.89 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:K.85 Water bridges: C:Y.89

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.6: 2 residues within 4Å: Chain C: E.243, R.246 4 PLIP interactions: 4 interactions with chain C Water bridges: C:T.224, C:S.242, C:R.246 Salt bridges: C:R.246 SO4.7: 4 residues within 4Å: Chain C: K.43, S.44, E.45, N.46 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:S.44, C:E.45, C:N.46 SO4.8: 2 residues within 4Å: Chain C: Q.50, K.197 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:Q.50 Salt bridges: C:K.197 SO4.9: 5 residues within 4Å: Chain C: S.8, L.100, F.101, N.102, R.105 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:S.8, C:L.100, C:N.102 Salt bridges: C:R.105

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chevalier, B.S. et al., Design, Activity and Structure of a Highly Specific Artificial Endonuclease. Mol.Cell (2002)

Release Date

2002-11-29

Peptides

chimera of homing endonuclease I-DmoI and DNA endonuclease I-CreI: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

C
D

chimera of homing endonuclease I-DmoI and DNA endonuclease I-CreI

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