SMTL ID : 1mox.1

Crystal Structure of Human Epidermal Growth Factor Receptor (residues 1-501) in complex with TGF-alpha

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

hetero-2-2-mer

Ligands

1 x NAG- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-FUC.1: 4 residues within 4Å: Chain A: K.5, Q.28, N.32, N.33 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:N.33 Hydrogen bonds: A:K.5

1 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN.2: 13 residues within 4Å: Chain A: N.91, F.321, D.323, S.324, L.325, S.326, N.328, N.331, V.350, D.355, T.358, T.360 Ligands: CL.14 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.320, A:T.358, A:N.91, A:N.91, A:D.323, A:D.323, A:N.91

1 x NAG- NAG- BMA- FUC: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-FUC.3: 2 residues within 4Å: Chain B: N.32, N.33 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.4: 10 residues within 4Å: Chain B: E.320, D.323, S.324, L.325, N.328, T.330, N.331, V.350, T.358, T.360 No protein-ligand interaction detected (PLIP)

7 x PT: PLATINUM (II) ION(Non-covalent)

PT.5: 1 residues within 4Å: Chain A: M.30 No protein-ligand interaction detected (PLIP) PT.6: 2 residues within 4Å: Chain A: M.152, M.154 No protein-ligand interaction detected (PLIP) PT.7: 2 residues within 4Å: Chain A: Y.292, M.294 No protein-ligand interaction detected (PLIP) PT.16: 2 residues within 4Å: Chain A: H.280 Chain B: M.244 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.280 PT.17: 2 residues within 4Å: Chain B: T.10, M.30 No protein-ligand interaction detected (PLIP) PT.18: 2 residues within 4Å: Chain A: M.244 Chain B: H.280 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:H.280 PT.19: 3 residues within 4Å: Chain B: W.140, M.152, M.154 No protein-ligand interaction detected (PLIP)

11 x CD: CADMIUM ION(Non-covalent)

CD.8: 6 residues within 4Å: Chain A: D.392, R.427, E.495, D.498 Ligands: CD.9, CL.12 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:E.495, A:D.498, A:D.498 CD.9: 4 residues within 4Å: Chain A: D.392, H.394, E.397 Ligands: CD.8 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.392, A:H.394 CD.10: 1 residues within 4Å: Chain A: E.495 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.495, A:E.495 CD.11: 2 residues within 4Å: Chain A: H.280 Chain B: H.280 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.280 CD.20: 1 residues within 4Å: Chain B: H.359 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:H.359 CD.21: 2 residues within 4Å: Chain B: D.392, H.394 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:D.392, B:D.392, B:H.394 CD.22: 1 residues within 4Å: Chain B: E.495 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:E.495, B:E.495 CD.23: 2 residues within 4Å: Chain B: K.333, H.334 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:H.334 CD.24: 3 residues within 4Å: Chain B: E.3, E.35 Ligands: CL.25 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:E.35, B:E.35 CD.26: 2 residues within 4Å: Chain C: H.18, H.35 No protein-ligand interaction detected (PLIP) CD.27: 2 residues within 4Å: Chain B: H.409 Chain D: H.45 1 PLIP interactions: 1 interactions with chain D Metal complexes: D:H.45

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.12: 4 residues within 4Å: Chain A: P.494, E.495, D.498 Ligands: CD.8 Ligand excluded by PLIP CL.13: 4 residues within 4Å: Chain A: E.320, K.333, H.334 Ligands: CL.14 Ligand excluded by PLIP CL.14: 3 residues within 4Å: Chain A: E.320 Ligands: NAG-NAG-BMA-MAN.2, CL.13 Ligand excluded by PLIP CL.25: 2 residues within 4Å: Chain B: E.35 Ligands: CD.24 Ligand excluded by PLIP

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.15: 1 residues within 4Å: Chain B: N.172 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Garrett, T.P.J. et al., Crystal Structure of a Truncated Epidermal Growth Factor Receptor Extracellular Domain Bound to Transforming Growth Factor alpha. Cell(Cambridge,Mass.) (2002)

Release Date

2003-09-10

Peptides

Epidermal Growth Factor Receptor: AB
Transforming Growth Factor alpha: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Epidermal Growth Factor Receptor

Transforming Growth Factor alpha

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