SMTL ID : 1mp4.1

W224H VARIANT OF S. ENTERICA RmlA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-tetramer

Ligands

4 x UPG: URIDINE-5'-DIPHOSPHATE-GLUCOSE(Non-covalent)

UPG.1: 19 residues within 4Å: Chain A: L.9, G.11, G.12, Q.27, Q.83, P.86, D.87, G.88, L.89, L.109, D.111, Y.146, G.147, E.162, K.163, V.173, R.195, I.200, T.201 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:L.89 Hydrogen bonds: A:G.11, A:G.11, A:Q.27, A:Q.83, A:Q.83, A:G.88, A:G.147, A:E.162, A:V.173, A:E.197, A:T.201 Salt bridges: A:K.163, A:K.163, A:R.195 UPG.2: 20 residues within 4Å: Chain B: L.9, G.11, G.12, Q.26, Q.83, P.86, D.87, G.88, L.89, L.109, D.111, Y.146, G.147, E.162, K.163, V.173, Y.177, R.195, I.200, T.201 13 PLIP interactions: 13 interactions with chain B Hydrogen bonds: B:G.11, B:Q.26, B:Q.27, B:Q.83, B:Q.83, B:G.88, B:G.147, B:E.162, B:V.173, B:T.201 Salt bridges: B:K.163, B:K.163, B:R.195 UPG.3: 19 residues within 4Å: Chain C: L.9, G.11, G.12, Q.27, Q.83, P.86, D.87, G.88, L.89, L.109, D.111, Y.146, G.147, E.162, K.163, V.173, R.195, I.200, T.201 14 PLIP interactions: 14 interactions with chain C Hydrophobic interactions: C:L.89 Hydrogen bonds: C:G.11, C:G.11, C:Q.27, C:Q.83, C:Q.83, C:G.88, C:G.147, C:E.162, C:V.173, C:E.197 Salt bridges: C:K.163, C:K.163, C:R.195 UPG.4: 20 residues within 4Å: Chain D: L.9, G.11, G.12, Q.26, Q.83, P.86, D.87, G.88, L.89, L.109, D.111, Y.146, G.147, E.162, K.163, V.173, Y.177, R.195, I.200, T.201 12 PLIP interactions: 12 interactions with chain D Hydrogen bonds: D:G.11, D:Q.26, D:Q.27, D:Q.83, D:Q.83, D:G.88, D:G.147, D:E.162, D:V.173 Salt bridges: D:K.163, D:K.163, D:R.195

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Barton, W.A. et al., Expanding pyrimidine diphosphosugar libraries via structure-based nucleotidylyltransferase engineering. Proc.Natl.Acad.Sci.USA (2002)

Release Date

2002-10-09

Peptides

W224H Variant of S. Enterica RmlA Bound to UDP-Glucose: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

W224H Variant of S. Enterica RmlA Bound to UDP-Glucose