SMTL ID : 1mp5.1

Y177F VARIANT OF S. ENTERICA RmlA

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.75 Å

Oligo State

homo-tetramer

Ligands

4 x UPG: URIDINE-5'-DIPHOSPHATE-GLUCOSE(Non-covalent)

UPG.1: 22 residues within 4Å: Chain A: L.9, G.11, G.12, Q.26, Q.27, Q.83, P.86, D.87, G.88, L.89, L.109, D.111, Y.146, G.147, E.162, K.163, V.173, R.195, E.199, I.200, T.201, W.224 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:G.11, A:Q.26, A:Q.27, A:Q.83, A:Q.83, A:G.88, A:G.147, A:E.199, A:T.201 Salt bridges: A:K.163, A:K.163, A:R.195 UPG.2: 21 residues within 4Å: Chain B: L.9, G.11, G.12, R.16, Q.26, Q.27, Q.83, P.86, D.87, G.88, L.89, L.109, D.111, Y.146, G.147, E.162, K.163, V.173, R.195, I.200, T.201 16 PLIP interactions: 16 interactions with chain B Hydrophobic interactions: B:L.89 Hydrogen bonds: B:G.11, B:R.16, B:R.16, B:Q.26, B:Q.27, B:Q.83, B:Q.83, B:G.88, B:G.147, B:E.199, B:E.199, B:T.201, B:T.201 Salt bridges: B:K.163, B:R.195 UPG.3: 22 residues within 4Å: Chain C: L.9, G.11, G.12, S.13, R.16, Q.26, Q.27, P.86, L.89, L.109, D.111, Y.146, G.147, E.162, K.163, V.173, T.174, G.175, R.195, E.197, I.200, T.201 14 PLIP interactions: 14 interactions with chain C Hydrogen bonds: C:S.13, C:Q.26, C:Q.27, C:D.111, C:G.147, C:E.162, C:R.195, C:E.197, C:T.201 Salt bridges: C:R.16, C:K.163, C:K.163, C:R.195 pi-Cation interactions: C:R.16 UPG.4: 21 residues within 4Å: Chain D: L.9, G.11, G.12, Q.26, Q.27, Q.83, P.86, D.87, G.88, L.89, L.109, D.111, Y.146, G.147, E.162, K.163, V.173, R.195, I.200, T.201, W.224 12 PLIP interactions: 12 interactions with chain D Hydrogen bonds: D:G.11, D:Q.26, D:Q.27, D:Q.83, D:Q.83, D:G.88, D:G.147, D:E.162, D:E.199 Salt bridges: D:K.163, D:K.163, D:R.195

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Barton, W.A. et al., Expanding pyrimidine diphosphosugar libraries via structure-based nucleotidylyltransferase engineering. Proc.Natl.Acad.Sci.USA (2002)

Release Date

2002-10-09

Peptides

Y177F VARIANT OF S. ENTERICA RmlA BOUND TO UDP-GLUCOSE: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Y177F VARIANT OF S. ENTERICA RmlA BOUND TO UDP-GLUCOSE