SMTL ID : 1mpy.1

STRUCTURE OF CATECHOL 2,3-DIOXYGENASE (METAPYROCATECHASE) FROM PSEUDOMONAS PUTIDA MT-2

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-tetramer

Ligands

4 x FE2: FE (II) ION(Non-covalent)

FE2.1: 6 residues within 4Å: Chain A: H.153, H.214, S.216, Y.255, E.265 Ligands: ACN.5 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Ligand interactions Metal complexes: A:H.153, A:H.214, A:E.265, ACN.5 FE2.2: 6 residues within 4Å: Chain B: H.153, H.214, S.216, Y.255, E.265 Ligands: ACN.6 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Ligand interactions Metal complexes: B:H.153, B:H.214, B:E.265, ACN.6 FE2.3: 6 residues within 4Å: Chain C: H.153, H.214, S.216, Y.255, E.265 Ligands: ACN.7 4 PLIP interactions: 3 interactions with chain C, 1 Ligand-Ligand interactions Metal complexes: C:H.153, C:H.214, C:E.265, ACN.7 FE2.4: 6 residues within 4Å: Chain D: H.153, H.199, H.214, S.216, E.265 Ligands: ACN.8 4 PLIP interactions: 3 interactions with chain D, 1 Ligand-Ligand interactions Metal complexes: D:H.153, D:H.214, D:E.265, ACN.8

4 x ACN: ACETONE(Non-covalent)

ACN.5: 8 residues within 4Å: Chain A: F.191, H.199, H.214, H.246, L.248, T.249, Y.255 Ligands: FE2.1 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.191, A:L.248, A:T.249 ACN.6: 7 residues within 4Å: Chain B: F.191, H.214, H.246, L.248, T.249, Y.255 Ligands: FE2.2 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:F.191, B:F.191, B:T.249 Hydrogen bonds: B:Y.255 ACN.7: 7 residues within 4Å: Chain C: H.214, H.246, L.248, T.249, Y.255, E.265 Ligands: FE2.3 3 PLIP interactions: 3 interactions with chain C Hydrophobic interactions: C:H.246 Hydrogen bonds: C:Y.255 Water bridges: C:T.249 ACN.8: 8 residues within 4Å: Chain D: L.155, F.191, H.246, L.248, Y.255, I.291, F.302 Ligands: FE2.4 6 PLIP interactions: 6 interactions with chain D Hydrophobic interactions: D:L.155, D:F.191, D:F.191, D:L.248, D:I.291, D:F.302

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kita, A. et al., An archetypical extradiol-cleaving catecholic dioxygenase: the crystal structure of catechol 2,3-dioxygenase (metapyrocatechase) from Ppseudomonas putida mt-2. Structure Fold.Des. (1999)

Release Date

1999-05-18

Peptides

CATECHOL 2,3-DIOXYGENASE: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

CATECHOL 2,3-DIOXYGENASE