SMTL ID : 1mqp.1

THE CRYSTAL STRUCTURE OF ALPHA-D-GLUCURONIDASE FROM BACILLUS STEAROTHERMOPHILUS T-6

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

14 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 9 residues within 4Å: Chain A: Y.91, Y.116, H.120, R.123, S.189, V.190, G.191, R.467, W.470 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:Y.91, A:H.120, A:R.123, A:R.123, A:V.190, A:R.467 Water bridges: A:E.138, A:E.138 GOL.2: 7 residues within 4Å: Chain A: R.368, E.369, V.371, E.409, F.413, E.584, L.585 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.368, A:E.409, A:E.409 Water bridges: A:V.371 GOL.3: 3 residues within 4Å: Chain A: K.620, K.653, R.656 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:E.617, A:K.620, A:K.653, A:R.656, A:R.656 Water bridges: A:Y.678 GOL.4: 7 residues within 4Å: Chain A: K.15, S.19, L.21, M.50, L.125, E.129, I.131 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.19 Water bridges: A:S.19, A:E.129 GOL.5: 7 residues within 4Å: Chain A: Y.340, A.377, A.565, Q.566, Y.567, F.568, P.569 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.340, A:Y.567 GOL.6: 5 residues within 4Å: Chain A: R.335, W.520, H.527, Y.535, W.540 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.335, A:R.335, A:Y.535 Water bridges: A:G.525 GOL.7: 4 residues within 4Å: Chain A: E.570, A.573, M.574, T.580 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:M.574 Water bridges: A:T.580, A:T.580 GOL.8: 9 residues within 4Å: Chain B: Y.91, Y.116, H.120, R.123, S.189, V.190, G.191, R.467, W.470 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:Y.91, B:Y.91, B:R.123, B:R.123, B:V.190, B:R.467 Water bridges: B:E.138, B:R.467 GOL.9: 7 residues within 4Å: Chain B: R.368, E.369, V.371, E.409, F.413, E.584, L.585 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.368, B:E.409 Water bridges: B:V.371 GOL.10: 3 residues within 4Å: Chain B: K.620, K.653, R.656 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:E.617, B:K.620, B:K.653, B:R.656, B:R.656 GOL.11: 7 residues within 4Å: Chain B: K.15, S.19, L.21, M.50, L.125, E.129, I.131 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:S.19 Water bridges: B:S.19, B:E.129 GOL.12: 7 residues within 4Å: Chain B: Y.340, A.377, A.565, Q.566, Y.567, F.568, P.569 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Y.567 GOL.13: 5 residues within 4Å: Chain B: R.335, W.520, H.527, Y.535, W.540 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.335, B:R.335, B:Y.535 Water bridges: B:G.525 GOL.14: 4 residues within 4Å: Chain B: E.570, A.573, M.574, T.580 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:M.574 Water bridges: B:T.580

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Golan, G. et al., Crystal structures of Geobacillus stearothermophilus alpha-glucuronidase complexed with its substrate and products: mechanistic implications. J.Biol.Chem. (2004)

Release Date

2003-09-23

Peptides

alpha-D-glucuronidase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

alpha-D-glucuronidase