- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.16 Å
- Oligo State
- hetero-oligomer
- Ligands
- 1 x ZN: ZINC ION(Non-covalent)
- 2 x NA: SODIUM ION(Non-functional Binders)
- 2 x F43: FACTOR 430(Non-covalent)
- 2 x TP7: COENZYME B(Non-covalent)
TP7.6: 20 residues within 4Å:- Chain A: R.269, L.319, M.323, S.324, F.329, F.442, M.479, N.480, V.481
- Chain B: F.360, F.361, Y.366, G.367, G.368, H.378, I.379, V.380
- Chain D: R.224, K.255, H.256
20 PLIP interactions:5 interactions with chain A, 6 interactions with chain D, 9 interactions with chain B- Hydrophobic interactions: A:L.319, A:F.329, B:F.361, B:Y.366, B:I.379, B:V.380
- Water bridges: A:R.269, A:M.323, D:R.224, D:R.224, B:Y.366, B:G.368
- Salt bridges: A:R.269, D:R.224, D:K.255, D:K.255, B:H.378
- Hydrogen bonds: D:K.255, B:Y.366, B:G.368
TP7.7: 20 residues within 4Å:- Chain A: R.224, K.255, H.256
- Chain D: R.269, L.319, M.323, S.324, F.329, F.442, M.479, N.480, V.481
- Chain E: F.360, F.361, Y.366, G.367, G.368, H.378, I.379, V.380
20 PLIP interactions:9 interactions with chain E, 7 interactions with chain A, 4 interactions with chain D- Hydrophobic interactions: E:F.361, E:Y.366, E:I.379, E:V.380, D:M.323, D:F.329
- Hydrogen bonds: E:Y.366, E:G.368, A:K.255
- Water bridges: E:G.368, E:H.378, A:R.224, A:R.224, A:K.255, D:M.323
- Salt bridges: E:H.378, A:R.224, A:K.255, A:K.255, D:R.269
- 2 x COM: 1-THIOETHANESULFONIC ACID(Non-covalent)
COM.8: 9 residues within 4Å:- Chain D: Y.332, F.442, Y.443
- Chain E: F.360, S.364, Y.366
- Chain F: L.116, R.119
- Ligands: F43.4
4 PLIP interactions:1 interactions with chain D, 3 interactions with chain F- Hydrogen bonds: D:Y.443
- Water bridges: F:R.119, F:R.119
- Salt bridges: F:R.119
COM.9: 9 residues within 4Å:- Chain A: Y.332, F.442, Y.443
- Chain B: F.360, S.364, Y.366
- Chain C: L.116, R.119
- Ligands: F43.5
3 PLIP interactions:1 interactions with chain A, 2 interactions with chain C- Hydrogen bonds: A:Y.443
- Water bridges: C:R.119
- Salt bridges: C:R.119
- 4 x GOL: GLYCEROL(Non-functional Binders)
GOL.10: 5 residues within 4Å:- Chain A: S.223, R.224, K.255, H.261, E.274
8 PLIP interactions:7 interactions with chain A, 1 interactions with chain D- Hydrogen bonds: A:S.223, A:R.224
- Water bridges: A:R.224, A:R.224, A:R.224, A:E.274, A:E.274, D:R.269
GOL.11: 5 residues within 4Å:- Chain D: D.169, A.172, D.173, D.182, N.184
4 PLIP interactions:4 interactions with chain D- Hydrogen bonds: D:N.184, D:N.184
- Water bridges: D:D.182, D:I.183
GOL.12: 5 residues within 4Å:- Chain D: S.223, R.224, K.255, H.261, E.274
7 PLIP interactions:7 interactions with chain D- Hydrogen bonds: D:S.223, D:R.224, D:E.274
- Water bridges: D:R.224, D:R.224, D:R.224, D:E.274
GOL.13: 4 residues within 4Å:- Chain A: D.169, D.173, D.182, N.184
7 PLIP interactions:7 interactions with chain A- Hydrogen bonds: A:D.169, A:D.173, A:D.182, A:N.184
- Water bridges: A:D.182, A:I.183, A:I.183
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ermler, U. et al., Crystal structure of methyl-coenzyme M reductase: the key enzyme of biological methane formation. Science (1997)
- Release Date
- 1998-11-11
- Peptides
- METHYL-COENZYME M REDUCTASE: AD
METHYL-COENZYME M REDUCTASE: BE
METHYL-COENZYME M REDUCTASE: CF - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AD
DB
BE
EC
CF
F
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.16 Å
- Oligo State
- hetero-oligomer
- Ligands
- 1 x ZN: ZINC ION(Non-covalent)
- 2 x NA: SODIUM ION(Non-functional Binders)
- 2 x F43: FACTOR 430(Non-covalent)
- 2 x TP7: COENZYME B(Non-covalent)
- 2 x COM: 1-THIOETHANESULFONIC ACID(Non-covalent)
- 4 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ermler, U. et al., Crystal structure of methyl-coenzyme M reductase: the key enzyme of biological methane formation. Science (1997)
- Release Date
- 1998-11-11
- Peptides
- METHYL-COENZYME M REDUCTASE: AD
METHYL-COENZYME M REDUCTASE: BE
METHYL-COENZYME M REDUCTASE: CF - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AD
DB
BE
EC
CF
F