SMTL ID : 1msa.1

MANNOSE-SPECIFIC AGGLUTININ (LECTIN) FROM SNOWDROP (GALANTHUS NIVALIS) BULBS COMPLEXED WITH METHYL-ALPHA-D-MANNOSIDE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.29 Å

Oligo State

homo-tetramer

Ligands

12 x MMA: methyl alpha-D-mannopyranoside(Non-covalent)

MMA.1: 8 residues within 4Å: Chain A: Q.89, D.91, N.93, V.95, Y.97 Chain D: N.83, D.100, A.103 11 PLIP interactions: 6 interactions with chain D, 5 interactions with chain A Hydrogen bonds: D:D.100, A:Q.89, A:D.91, A:N.93, A:Y.97, A:Y.97 Water bridges: D:N.83, D:Y.84, D:D.100, D:W.102 Salt bridges: D:H.107 MMA.2: 6 residues within 4Å: Chain A: Q.57, D.59, N.61, Y.65, P.71, A.74 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Q.57, A:D.59, A:N.61, A:Y.65, A:Y.65 Water bridges: A:N.76 MMA.3: 7 residues within 4Å: Chain A: Q.26, D.28, N.30, V.32, Y.34, P.39, A.42 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.26, A:N.30, A:Y.34, A:Y.34 MMA.4: 8 residues within 4Å: Chain B: Q.89, D.91, N.93, V.95, Y.97 Chain C: N.83, D.100, A.103 8 PLIP interactions: 4 interactions with chain C, 4 interactions with chain B Water bridges: C:N.83, C:N.83, C:W.102 Salt bridges: C:H.107 Hydrogen bonds: B:Q.89, B:N.93, B:Y.97, B:Y.97 MMA.5: 7 residues within 4Å: Chain B: Q.57, D.59, N.61, V.63, Y.65, P.71, A.74 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:Q.57, B:D.59, B:N.61, B:Y.65 MMA.6: 6 residues within 4Å: Chain B: Q.26, D.28, N.30, V.32, Y.34, A.42 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:Q.26, B:N.30, B:Y.34, B:Y.34 MMA.7: 9 residues within 4Å: Chain B: N.83, D.100, A.103, H.107 Chain C: Q.89, D.91, N.93, V.95, Y.97 8 PLIP interactions: 5 interactions with chain C, 3 interactions with chain B Hydrogen bonds: C:Q.89, C:D.91, C:N.93, C:Y.97, C:Y.97, B:N.83 Water bridges: B:A.103 Salt bridges: B:H.107 MMA.8: 6 residues within 4Å: Chain C: Q.57, D.59, N.61, Y.65, P.71, A.74 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:Q.57, C:N.61, C:Y.65, C:Y.65 MMA.9: 6 residues within 4Å: Chain C: Q.26, D.28, N.30, Y.34, P.39, A.42 7 PLIP interactions: 7 interactions with chain C Hydrogen bonds: C:Q.26, C:D.28, C:N.30, C:Y.34, C:Y.34 Water bridges: C:D.28, C:G.46 MMA.10: 8 residues within 4Å: Chain A: N.83, D.100, A.103 Chain D: Q.89, D.91, N.93, V.95, Y.97 6 PLIP interactions: 3 interactions with chain D, 3 interactions with chain A Hydrogen bonds: D:Q.89, D:N.93, D:Y.97, A:D.100 Water bridges: A:N.83 Salt bridges: A:H.107 MMA.11: 6 residues within 4Å: Chain D: Q.57, D.59, N.61, V.63, Y.65, A.74 5 PLIP interactions: 5 interactions with chain D Hydrogen bonds: D:Q.57, D:D.59, D:N.61, D:Y.65, D:Y.65 MMA.12: 5 residues within 4Å: Chain D: Q.26, D.28, N.30, Y.34, P.39 5 PLIP interactions: 5 interactions with chain D Hydrogen bonds: D:Q.26, D:D.28, D:N.30, D:Y.34, D:Y.34

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hester, G. et al., Structure of mannose-specific snowdrop (Galanthus nivalis) lectin is representative of a new plant lectin family. Nat.Struct.Biol. (1995)

Release Date

1995-09-15

Peptides

AGGLUTININ: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

AGGLUTININ

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