SMTL ID : 1mt9.1

Viability of a drug-resistant HIV-1 protease mutant: structural insights for better antiviral therapy

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

hetero-2-1-mer

Ligands

6 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 3 residues within 4Å: Chain A: K.7, R.8 Chain B: R.87 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A Salt bridges: B:R.87, A:R.8 Hydrogen bonds: A:R.8 PO4.2: 4 residues within 4Å: Chain A: G.73, T.74, N.88, Q.92 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.74, A:N.88, A:Q.92 Water bridges: A:D.60, A:G.73 PO4.3: 2 residues within 4Å: Chain A: P.39, G.40 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.40 Water bridges: A:L.38, A:P.39 PO4.4: 3 residues within 4Å: Chain B: G.68, H.69, K.70 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:G.68, B:K.70 Salt bridges: B:H.69 PO4.5: 3 residues within 4Å: Chain B: P.1, C.67, H.69 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:P.1 Salt bridges: B:H.69 PO4.6: 3 residues within 4Å: Chain B: R.14, G.16, G.17 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:G.17 Water bridges: B:R.14 Salt bridges: B:R.14

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Prabu-Jeyabalan, M. et al., Viability of drug-resistant human immunodeficiency virus type 1 protease variant: structural insights for better antiviral therapy. J.Virol. (2003)

Release Date

2003-01-07

Peptides

PROTEASE RETROPEPSIN: AB
p1-p6 Gag substrate decapeptide: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
P

PROTEASE RETROPEPSIN

p1-p6 Gag substrate decapeptide

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