SMTL ID : 1mu2.1

CRYSTAL STRUCTURE OF HIV-2 REVERSE TRANSCRIPTASE

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

hetero-1-1-mer

Ligands

22 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 7 residues within 4Å: Chain A: R.165, E.169, R.172, K.173 Chain B: K.30, E.134, K.137 Ligand excluded by PLIP SO4.2: 4 residues within 4Å: Chain A: F.221, Q.222, K.223, D.224 Ligand excluded by PLIP SO4.3: 3 residues within 4Å: Chain A: V.5, H.162, Q.166 Ligand excluded by PLIP SO4.4: 5 residues within 4Å: Chain A: H.538, K.539, G.540, Q.545, H.549 Ligand excluded by PLIP SO4.5: 3 residues within 4Å: Chain A: E.48, R.125, K.147 Ligand excluded by PLIP SO4.6: 3 residues within 4Å: Chain A: K.275, T.276, K.277 Ligand excluded by PLIP SO4.7: 3 residues within 4Å: Chain A: E.324, R.384, I.385 Ligand excluded by PLIP SO4.8: 4 residues within 4Å: Chain A: A.174, N.175, R.193, Q.204 Ligand excluded by PLIP SO4.9: 4 residues within 4Å: Chain A: H.278, R.281, T.296, L.298 Ligand excluded by PLIP SO4.10: 3 residues within 4Å: Chain A: R.394, D.414, F.415 Ligand excluded by PLIP SO4.11: 3 residues within 4Å: Chain A: R.460, G.489, P.490 Ligand excluded by PLIP SO4.12: 3 residues within 4Å: Chain A: S.498, Q.499, Y.500 Ligand excluded by PLIP SO4.13: 3 residues within 4Å: Chain A: W.295, T.296, E.297 Ligand excluded by PLIP SO4.14: 6 residues within 4Å: Chain A: Q.248, K.249, W.252, E.300, L.303, R.307 Ligand excluded by PLIP SO4.15: 3 residues within 4Å: Chain A: K.82, S.284, G.285 Ligand excluded by PLIP SO4.17: 2 residues within 4Å: Chain B: R.120, K.142 Ligand excluded by PLIP SO4.18: 4 residues within 4Å: Chain A: K.539 Chain B: K.270, T.271, K.272 Ligand excluded by PLIP SO4.19: 6 residues within 4Å: Chain B: G.311, H.312, Y.313, Y.314, L.343, W.377 Ligand excluded by PLIP SO4.20: 3 residues within 4Å: Chain A: K.539 Chain B: N.260, Q.264 Ligand excluded by PLIP SO4.21: 4 residues within 4Å: Chain A: P.411 Chain B: N.357, R.360, Y.399 Ligand excluded by PLIP SO4.22: 4 residues within 4Å: Chain B: K.15, L.16, R.17 Ligands: GOL.26 Ligand excluded by PLIP SO4.23: 2 residues within 4Å: Chain B: V.411, S.412 Ligand excluded by PLIP

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.16: 8 residues within 4Å: Chain A: G.99, L.100, A.101, I.179, I.181 Chain B: V.130, N.131, A.133 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:N.131, A:A.101 GOL.24: 8 residues within 4Å: Chain B: I.70, F.72, N.76, G.147, M.179, T.403, W.404, I.405 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:I.70, B:N.76, B:I.405, B:I.405 Water bridges: B:I.70 GOL.25: 8 residues within 4Å: Chain B: L.265, Y.266, P.267, E.308, Y.313, E.340, K.341, I.342 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.308, B:I.342, B:I.342 GOL.26: 7 residues within 4Å: Chain A: K.376 Chain B: R.17, Q.18, W.19, P.20, Q.394 Ligands: SO4.22 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:Q.18, B:Q.394, A:K.376, A:K.376 GOL.27: 2 residues within 4Å: Chain B: G.268, K.270 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:G.268, B:K.270

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ren, J. et al., Structure of HIV-2 reverse transcriptase at 2.35-A resolution and the mechanism of resistance to non-nucleoside inhibitors. Proc.Natl.Acad.Sci.USA (2002)

Release Date

2002-10-30

Peptides

HIV-2 RT: A
HIV-2 RT: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

HIV-2 RT

HIV-2 RT