SMTL ID : 1muj.1

Crystal structure of murine class II MHC I-Ab in complex with a human CLIP peptide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

hetero-1-1-1-mer

Ligands

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: N.122, E.170, H.171 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.122 NAG.2: 2 residues within 4Å: Chain B: N.19, Q.22 1 PLIP interactions: 1 interactions with chain B Water bridges: B:Q.22

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhu, Y. et al., Crystal structure of MHC class II I-Ab in complex with a human CLIP peptide: Prediction of an I-Ab peptide-binding motif. J.Mol.Biol. (2003)

Release Date

2003-02-18

Peptides

H-2 CLASS II HISTOCOMPATIBILITY ANTIGEN, A-B ALPHA CHAIN: A
H-2 CLASS II HISTOCOMPATIBILITY ANTIGEN, A BETA CHAIN: B
CLIP peptide: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

H-2 CLASS II HISTOCOMPATIBILITY ANTIGEN, A-B ALPHA CHAIN

H-2 CLASS II HISTOCOMPATIBILITY ANTIGEN, A BETA CHAIN

CLIP peptide