SMTL ID : 1mus.1

crystal structure of Tn5 transposase complexed with resolved outside end DNA

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

4 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 5 residues within 4Å: Chain A: G.20 Chain B: C.1 Chain C: D.97, E.326 Ligands: MN.2 4 PLIP interactions: 3 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:D.97, C:E.326, C:E.326, H2O.1 MN.2: 4 residues within 4Å: Chain B: C.1 Chain C: D.97, D.188 Ligands: MN.1 4 PLIP interactions: 2 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:D.97, C:D.188, H2O.5, H2O.5 MN.8: 5 residues within 4Å: Chain D: G.20 Chain E: C.1 Chain F: D.97, E.326 Ligands: MN.9 4 PLIP interactions: 3 interactions with chain F, 1 Ligand-Water interactions Metal complexes: F:D.97, F:E.326, F:E.326, H2O.24 MN.9: 4 residues within 4Å: Chain E: C.1 Chain F: D.97, D.188 Ligands: MN.8 4 PLIP interactions: 2 interactions with chain F, 2 Ligand-Water interactions Metal complexes: F:D.97, F:D.188, H2O.29, H2O.29

4 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 2 residues within 4Å: Chain C: S.178, S.181 3 PLIP interactions: 2 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:S.178, C:S.181, H2O.24 MG.4: 2 residues within 4Å: Chain C: E.451, E.454 5 PLIP interactions: 2 interactions with chain C, 3 Ligand-Water interactions Metal complexes: C:E.451, C:E.454, H2O.14, H2O.16, H2O.17 MG.10: 2 residues within 4Å: Chain F: S.178, S.181 3 PLIP interactions: 2 interactions with chain F, 1 Ligand-Water interactions Metal complexes: F:S.178, F:S.181, H2O.48 MG.11: 2 residues within 4Å: Chain F: E.451, E.454 5 PLIP interactions: 2 interactions with chain F, 3 Ligand-Water interactions Metal complexes: F:E.451, F:E.454, H2O.38, H2O.40, H2O.41

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.5: 4 residues within 4Å: Chain B: T.2, G.3 Chain C: R.256, L.296 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:R.256 EDO.6: 7 residues within 4Å: Chain C: S.42, G.43, T.334, G.335, L.363, W.446, W.450 No protein-ligand interaction detected (PLIP) EDO.7: 7 residues within 4Å: Chain C: E.146, W.148, E.159, K.160, E.161, G.163, K.164 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:E.159 EDO.12: 4 residues within 4Å: Chain E: T.2, G.3 Chain F: R.256, L.296 1 PLIP interactions: 1 interactions with chain F Hydrogen bonds: F:R.256 EDO.13: 7 residues within 4Å: Chain F: S.42, G.43, T.334, G.335, L.363, W.446, W.450 No protein-ligand interaction detected (PLIP) EDO.14: 7 residues within 4Å: Chain F: E.146, W.148, E.159, K.160, E.161, G.163, K.164 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Steiniger-White, M. et al., Structure/function insights into Tn5 transposition. Curr.Opin.Struct.Biol. (2004)

Release Date

2002-09-27

Peptides

Tn5 transposase: CF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

C
A

F
A

Tn5 transposase