SMTL ID : 1mxs.1

Crystal structure of 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase from Pseudomonas putida.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-trimer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: G.173, G.174, T.194, T.195 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.174, A:T.195 Water bridges: A:G.173, A:G.173 SO4.2: 8 residues within 4Å: Chain A: E.56, R.60, G.83, T.84, V.103, T.104, P.105, K.144 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:T.84, A:T.104 Water bridges: A:R.60, A:K.144 Salt bridges: A:R.60, A:K.144 SO4.3: 4 residues within 4Å: Chain B: G.173, G.174, T.194, T.195 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:G.174, B:T.195 Water bridges: B:G.173, B:G.173 SO4.4: 8 residues within 4Å: Chain B: E.56, R.60, G.83, T.84, V.103, T.104, P.105, K.144 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:T.84, B:T.104 Water bridges: B:R.60, B:K.144 Salt bridges: B:R.60, B:K.144 SO4.5: 4 residues within 4Å: Chain C: G.173, G.174, T.194, T.195 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:G.174, C:T.195 Water bridges: C:G.173, C:G.173 SO4.6: 8 residues within 4Å: Chain C: E.56, R.60, G.83, T.84, V.103, T.104, P.105, K.144 7 PLIP interactions: 7 interactions with chain C Hydrogen bonds: C:T.84, C:T.84, C:T.104 Water bridges: C:R.60, C:K.144 Salt bridges: C:R.60, C:K.144

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bell, B.J. et al., Structure of 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase from Pseudomonas putida. Acta Crystallogr.,Sect.D (2003)

Release Date

2003-09-16

Peptides

KDPG Aldolase: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

KDPG Aldolase