SMTL ID : 1mz9.1

Storage function of COMP:the crystal structure of the coiled-coil domain in complex with vitamin D3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-pentamer

Ligands

2 x VDY: 3-{2-[1-(5-HYDROXY-1,5-DIMETHYL-HEXYL)-7A-METHYL-OCTAHYDRO-INDEN-4-YLIDENE]-ETHYLIDENE}-4-METHYLENE-CYCLOHEXANOL(Non-covalent)

VDY.1: 22 residues within 4Å: Chain A: I.32, L.35, V.39, A.44 Chain B: I.32, L.35, V.39, A.44 Chain C: I.32, L.35, V.39, A.44, C.45 Chain D: L.35, V.39, C.42, A.44, C.45 Chain E: L.35, V.39, C.42, A.44 17 PLIP interactions: 3 interactions with chain B, 4 interactions with chain D, 3 interactions with chain E, 6 interactions with chain C, 1 interactions with chain A Hydrophobic interactions: B:I.32, B:L.35, B:V.39, D:L.35, D:L.35, D:V.39, D:V.39, E:L.35, E:V.39, E:A.44, C:I.32, C:I.32, C:L.35, C:L.35, C:V.39, C:A.44, A:L.35 VDY.2: 16 residues within 4Å: Chain A: L.11, T.14, L.25 Chain B: L.18, V.21, L.25 Chain C: T.14, L.18, L.25 Chain D: T.14, L.18, V.21, L.25 Chain E: T.14, L.18, V.21 13 PLIP interactions: 2 interactions with chain A, 1 interactions with chain E, 5 interactions with chain D, 1 interactions with chain C, 4 interactions with chain B Hydrophobic interactions: A:L.11, A:T.14, E:L.18, D:T.14, D:L.18, D:V.21, D:L.25, D:L.25, C:L.18, B:L.18, B:L.18, B:V.21, B:L.25

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ozbek, S. et al., Storage function of cartilage oligomeric matrix protein: the crystal structure of the coiled-coil domain in complex with vitamin D(3). EMBO J. (2002)

Release Date

2003-01-28

Peptides

cartilage oligomeric matrix protein: ABCDE

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

cartilage oligomeric matrix protein

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