SMTL ID : 1n1b.1

Crystal Structure of (+)-Bornyl Diphosphate Synthase from Sage

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: D.302, D.306, E.380 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.302, A:D.306, H2O.4937, H2O.4937, H2O.4937 MG.7: 3 residues within 4Å: Chain B: D.302, D.306, E.380 6 PLIP interactions: 2 interactions with chain B, 4 Ligand-Water interactions Metal complexes: B:D.302, B:D.306, H2O.4943, H2O.4943, H2O.4943, H2O.4943

11 x HG: MERCURY (II) ION(Non-covalent)

HG.2: 4 residues within 4Å: Chain A: Y.432, H.433, D.434, C.437 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:Y.432, A:C.437 HG.3: 3 residues within 4Å: Chain A: F.257, V.300, C.339 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:C.339 HG.4: 3 residues within 4Å: Chain A: A.139, C.172 Ligands: HG.5 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:C.172 HG.5: 4 residues within 4Å: Chain A: C.172, L.173, K.176 Ligands: HG.4 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:C.172 HG.6: 4 residues within 4Å: Chain A: C.90, E.95, V.122, C.125 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:C.90, A:C.125 HG.8: 3 residues within 4Å: Chain B: Y.432, D.434, C.437 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:Y.432, B:C.437 HG.9: 3 residues within 4Å: Chain B: F.257, Y.335, C.339 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:Y.335 HG.10: 3 residues within 4Å: Chain B: F.257, V.300, C.339 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:C.339 HG.11: 3 residues within 4Å: Chain B: A.139, C.172 Ligands: HG.12 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:C.172 HG.12: 5 residues within 4Å: Chain B: M.145, C.172, L.173, K.176 Ligands: HG.11 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:C.172 HG.13: 5 residues within 4Å: Chain B: C.90, N.94, E.95, V.122, C.125 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:C.90, B:E.95, B:C.125

Links

RCSB   PDBe   PDBj   PDBsum   CATH   PLIP

Citation

Whittington, D.A. et al., Bornyl Diphosphate Synthase: Structure and Strategy for Carbocation Manipulation by a Terpenoid Cyclase. Proc.Natl.Acad.Sci.USA (2002)

Release Date

2002-11-27

Peptides

(+)-bornyl diphosphate synthase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

(+)-bornyl diphosphate synthase

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