SMTL ID : 1n2m.1 (1 other biounit)

The S53A Proenzyme Structure of Methanococcus jannaschii.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-trimer

Ligands

4 x MRD: (4R)-2-METHYLPENTANE-2,4-DIOL(Non-functional Binders)

MRD.1: 5 residues within 4Å: Chain A: F.34, Y.77, Y.79, I.81 Chain C: E.109 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain C Hydrophobic interactions: A:F.34, A:F.34, A:I.81 Hydrogen bonds: C:E.109 MRD.2: 6 residues within 4Å: Chain A: E.109 Chain B: L.31, F.34, Y.77, Y.79, I.81 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:L.31, B:F.34, B:F.34, B:I.81 Hydrogen bonds: B:Y.79 MRD.3: 5 residues within 4Å: Chain B: K.128, F.131, E.132, G.135, W.136 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:E.132 Hydrogen bonds: B:W.136 MRD.4: 6 residues within 4Å: Chain B: E.109 Chain C: L.31, F.34, Y.77, Y.79, I.81 7 PLIP interactions: 5 interactions with chain C, 2 interactions with chain B Hydrophobic interactions: C:L.31, C:F.34, C:F.34, C:Y.79, C:I.81 Hydrogen bonds: B:E.109, B:E.109

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tolbert, W.D. et al., Pyruvoyl-Dependent Arginine Decarboxylase from Methanococcus jannaschii: Crystal Structures of the Self-Cleaved and S53A Proenzyme Forms. Structure (2003)

Release Date

2003-03-25

Peptides

Pyruvoyl-dependent arginine decarboxylase: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Pyruvoyl-dependent arginine decarboxylase

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