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SMTL ID : 1n2s.1
CRYSTAL STRUCTURE OF DTDP-6-DEOXY-L-LYXO-4-HEXULOSE REDUCTASE (RMLD) IN COMPLEX WITH NADH
Coordinates
PDB Format
Method
X-RAY DIFFRACTION 2.00 Å
Oligo State
homo-dimer
Ligands
2 x
MG
:
MAGNESIUM ION
(Non-covalent)
MG.1:
3 residues within 4Å:
Chain A:
E.292
Chain B:
E.292
Ligands:
MG.4
No protein-ligand interaction detected (PLIP)
MG.4:
3 residues within 4Å:
Chain A:
E.292
Chain B:
E.292
Ligands:
MG.1
No protein-ligand interaction detected (PLIP)
2 x
NAI
:
1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE
(Non-covalent)
NAI.2:
24 residues within 4Å:
Chain A:
G.7
,
T.9
,
G.10
,
Q.11
,
V.12
,
D.30
,
V.31
,
G.38
,
D.39
,
F.40
,
A.61
,
A.62
,
A.63
,
T.65
,
L.80
,
Y.102
,
S.103
,
T.104
,
Y.128
,
K.132
,
T.151
,
S.152
,
W.153
,
V.154
19
PLIP interactions
:
19 interactions with chain A
Hydrophobic interactions:
A:T.151
,
A:V.154
Hydrogen bonds:
A:G.7
,
A:T.9
,
A:T.9
,
A:G.10
,
A:Q.11
,
A:Q.11
,
A:V.12
,
A:D.39
,
A:D.39
,
A:F.40
,
A:A.63
,
A:Y.128
,
A:K.132
,
A:W.153
,
A:V.154
Water bridges:
A:G.13
,
A:Y.102
NAI.5:
24 residues within 4Å:
Chain B:
G.7
,
T.9
,
G.10
,
Q.11
,
V.12
,
D.30
,
V.31
,
G.38
,
D.39
,
F.40
,
A.61
,
A.62
,
A.63
,
T.65
,
L.80
,
Y.102
,
S.103
,
T.104
,
Y.128
,
K.132
,
T.151
,
S.152
,
W.153
,
V.154
19
PLIP interactions
:
19 interactions with chain B
Hydrophobic interactions:
B:T.151
,
B:V.154
Hydrogen bonds:
B:G.7
,
B:T.9
,
B:T.9
,
B:G.10
,
B:Q.11
,
B:Q.11
,
B:V.12
,
B:D.39
,
B:D.39
,
B:F.40
,
B:A.63
,
B:Y.128
,
B:K.132
,
B:W.153
,
B:V.154
Water bridges:
B:G.13
,
B:Y.102
2 x
TRS
:
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
(Non-functional Binders)
TRS.3:
0 residues within 4Å:
(No contacts)
No protein-ligand interaction detected (PLIP)
TRS.6:
0 residues within 4Å:
(No contacts)
No protein-ligand interaction detected (PLIP)
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Blankenfeldt, W. et al., Variation on a Theme of SDR. dTDP-6-Deoxy-L- lyxo-4-Hexulose Reductase (RmlD) Shows a New Mg(2+)-Dependent Dimerization Mode. Structure (2002)
Release Date
2002-11-01
Peptides
dTDP-glucose oxidoreductase:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
A
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dTDP-glucose oxidoreductase
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1kbz.1
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1kc1.1
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