SMTL ID : 1n2s.1

CRYSTAL STRUCTURE OF DTDP-6-DEOXY-L-LYXO-4-HEXULOSE REDUCTASE (RMLD) IN COMPLEX WITH NADH

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: E.292 Chain B: E.292 Ligands: MG.4 No protein-ligand interaction detected (PLIP) MG.4: 3 residues within 4Å: Chain A: E.292 Chain B: E.292 Ligands: MG.1 No protein-ligand interaction detected (PLIP)

2 x NAI: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE(Non-covalent)

NAI.2: 24 residues within 4Å: Chain A: G.7, T.9, G.10, Q.11, V.12, D.30, V.31, G.38, D.39, F.40, A.61, A.62, A.63, T.65, L.80, Y.102, S.103, T.104, Y.128, K.132, T.151, S.152, W.153, V.154 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:T.151, A:V.154 Hydrogen bonds: A:G.7, A:T.9, A:T.9, A:G.10, A:Q.11, A:Q.11, A:V.12, A:D.39, A:D.39, A:F.40, A:A.63, A:Y.128, A:K.132, A:W.153, A:V.154 Water bridges: A:G.13, A:Y.102 NAI.5: 24 residues within 4Å: Chain B: G.7, T.9, G.10, Q.11, V.12, D.30, V.31, G.38, D.39, F.40, A.61, A.62, A.63, T.65, L.80, Y.102, S.103, T.104, Y.128, K.132, T.151, S.152, W.153, V.154 19 PLIP interactions: 19 interactions with chain B Hydrophobic interactions: B:T.151, B:V.154 Hydrogen bonds: B:G.7, B:T.9, B:T.9, B:G.10, B:Q.11, B:Q.11, B:V.12, B:D.39, B:D.39, B:F.40, B:A.63, B:Y.128, B:K.132, B:W.153, B:V.154 Water bridges: B:G.13, B:Y.102

2 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.3: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) TRS.6: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Blankenfeldt, W. et al., Variation on a Theme of SDR. dTDP-6-Deoxy-L- lyxo-4-Hexulose Reductase (RmlD) Shows a New Mg(2+)-Dependent Dimerization Mode. Structure (2002)

Release Date

2002-11-01

Peptides

dTDP-glucose oxidoreductase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

dTDP-glucose oxidoreductase

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