SMTL ID : 1n38.1

reovirus polymerase lambda3 elongation complex with one phosphodiester bond formed

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

monomer

Ligands

1 x G- C: 5'-R(P*GP*C)-3'(Non-covalent)

G-C.1: 12 residues within 4Å: Chain A: G.560, S.561, A.562, K.566, Q.732, K.783, R.797, H.798, N.827 Ligands: U-U-A-G-C.2, U-U-A-G-C.2, U3H.5 Protein-ligand interaction information (PLIP) not available

1 x U- U- A- G- C: 5'-R(*AP*UP*UP*AP*GP*C)-3'(Non-covalent)

U-U-A-G-C.2: 28 residues within 4Å: Chain A: Q.454, T.457, R.459, G.460, G.461, S.462, A.464, K.486, A.488, K.490, S.514, M.515, G.516, R.518, I.528, M.529, P.530, Q.536, G.560, S.682, G.683, S.684, T.685, S.688, N.807 Ligands: G-C.1, G-C.1, U3H.5 Protein-ligand interaction information (PLIP) not available

2 x MN: MANGANESE (II) ION(Non-covalent)

MN.3: 6 residues within 4Å: Chain A: D.585, I.586, S.587, D.734 Ligands: MN.4, U3H.5 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.585, A:I.586, A:D.734 MN.4: 5 residues within 4Å: Chain A: D.585, D.734, D.735 Ligands: MN.3, U3H.5 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.585, A:D.734, A:D.734

1 x U3H: 3'-DEOXY-URIDINE 5'-TRIPHOSPHATE(Non-covalent)

U3H.5: 16 residues within 4Å: Chain A: R.523, R.524, R.526, D.585, I.586, S.587, A.588, D.590, T.687, H.691, D.734 Ligands: G-C.1, U-U-A-G-C.2, U-U-A-G-C.2, MN.3, MN.4 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:D.585, A:A.588 Water bridges: A:K.274, A:D.734 Salt bridges: A:R.523, A:R.523, A:R.523, A:R.524, A:R.524, A:R.526, A:K.783

2 x CH1: 3'-DEOXY-CYTIDINE-5'-TRIPHOSPHATE(Non-covalent)

CH1.6: 7 residues within 4Å: Chain A: K.32, S.35, M.36, R.851, R.853, Y.862 Ligands: CH1.7 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.35, A:R.851 Water bridges: A:Y.862 pi-Stacking: A:Y.862 CH1.7: 10 residues within 4Å: Chain A: W.814, P.815, Q.852, R.853, T.854, M.855, L.1031, M.1034, D.1035 Ligands: CH1.6 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:W.814, A:Q.852 Hydrogen bonds: A:Q.852, A:Q.852, A:R.853, A:M.855, A:D.1035

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tao, Y. et al., RNA Synthesis in a Cage--Structural Studies of Reovirus Polymerase [lambda] 3. Cell(Cambridge,Mass.) (2002)

Release Date

2002-12-25

Peptides

Minor core protein lambda 3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Minor core protein lambda 3

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