SMTL ID : 1n3b.1

Crystal Structure of Dephosphocoenzyme A kinase from Escherichia coli

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-trimer

Ligands

10 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 7 residues within 4Å: Chain A: G.10, I.11, G.12, S.13, G.14, K.15, R.144 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:G.12, A:S.13, A:G.14, A:K.15 Water bridges: A:S.16, A:R.144 Salt bridges: A:K.15, A:R.144 SO4.2: 7 residues within 4Å: Chain B: G.10, I.11, G.12, S.13, G.14, K.15, R.144 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:G.12, B:S.13, B:G.14, B:K.15 Water bridges: B:K.15, B:K.15, B:S.16 Salt bridges: B:K.15, B:R.144 SO4.3: 7 residues within 4Å: Chain C: G.10, I.11, G.12, S.13, G.14, K.15, R.144 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:G.12, C:S.13, C:G.14, C:K.15 Salt bridges: C:K.15, C:R.144 SO4.4: 9 residues within 4Å: Chain A: S.119, Y.121, K.122 Chain B: S.119, Y.121, K.122 Chain C: S.119, Y.121, K.122 11 PLIP interactions: 3 interactions with chain A, 4 interactions with chain C, 4 interactions with chain B Hydrogen bonds: A:S.119, C:S.119, C:S.119, B:S.119, B:Y.121 Water bridges: A:Y.121, C:K.122, B:K.122 Salt bridges: A:K.122, C:K.122, B:K.122 SO4.5: 2 residues within 4Å: Chain A: R.126, H.192 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.126, A:H.192 SO4.6: 2 residues within 4Å: Chain B: R.126, H.192 3 PLIP interactions: 3 interactions with chain B Water bridges: B:D.171 Salt bridges: B:R.126, B:H.192 SO4.7: 2 residues within 4Å: Chain C: R.126, H.192 3 PLIP interactions: 3 interactions with chain C Water bridges: C:R.126 Salt bridges: C:R.126, C:H.192 SO4.8: 5 residues within 4Å: Chain B: A.157 Chain C: Q.93, T.96, Q.97, W.110 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:Q.93 Salt bridges: C:K.123 SO4.9: 6 residues within 4Å: Chain A: A.157 Chain B: Q.93, T.96, Q.97, W.110, K.123 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:Q.93, B:Q.93, A:A.157 Salt bridges: B:K.123 SO4.10: 5 residues within 4Å: Chain A: Q.93, T.96, Q.97, W.110, K.123 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.93 Water bridges: A:K.123, A:K.123, A:K.123 Salt bridges: A:K.123

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

O'Toole, N. et al., Crystal Structure of a Trimeric Form of Dephosphocoenzyme A Kinase from Escherichia coli. Protein Sci. (2003)

Release Date

2003-01-28

Peptides

Dephospho-CoA kinase: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Dephospho-CoA kinase