SMTL ID : 1n3l.1

Crystal structure of a human aminoacyl-tRNA synthetase cytokine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.18 Å

Oligo State

homo-dimer

Ligands

8 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 7 residues within 4Å: Chain A: H.49, V.50, A.51, G.217, L.218, T.219, K.231 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:V.50, A:A.51, A:L.218, A:T.219 Salt bridges: A:H.49, A:K.231 SO4.2: 4 residues within 4Å: Chain A: H.305, P.306, G.307, D.308 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.307, A:D.308 Water bridges: A:H.305 Salt bridges: A:H.305 SO4.3: 2 residues within 4Å: Chain A: K.26, R.34 8 PLIP interactions: 8 interactions with chain A Water bridges: A:K.26, A:R.34, A:R.34, A:R.34, A:R.34, A:D.180 Salt bridges: A:K.26, A:R.34 SO4.4: 2 residues within 4Å: Chain A: K.282, W.283 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:W.283 Water bridges: A:D.280 Salt bridges: A:K.282 SO4.7: 7 residues within 4Å: Chain B: H.49, V.50, A.51, G.217, L.218, T.219, K.231 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:V.50, B:A.51, B:L.218, B:T.219 Salt bridges: B:H.49, B:K.231 SO4.8: 4 residues within 4Å: Chain B: H.305, P.306, G.307, D.308 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:G.307, B:D.308 Water bridges: B:H.305 Salt bridges: B:H.305 SO4.9: 2 residues within 4Å: Chain B: K.26, R.34 8 PLIP interactions: 8 interactions with chain B Water bridges: B:K.26, B:R.34, B:R.34, B:R.34, B:R.34, B:D.180 Salt bridges: B:K.26, B:R.34 SO4.10: 2 residues within 4Å: Chain B: K.282, W.283 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:W.283 Water bridges: B:D.280 Salt bridges: B:K.282

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 7 residues within 4Å: Chain A: P.213, M.214, V.215, P.216, S.262, K.265, H.266 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:M.214, A:S.262, A:K.265 Water bridges: A:S.262, A:K.265 GOL.6: 3 residues within 4Å: Chain A: H.12, R.16, S.273 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.16, A:S.273 GOL.11: 7 residues within 4Å: Chain B: P.213, M.214, V.215, P.216, S.262, K.265, H.266 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:M.214, B:S.262, B:K.265 Water bridges: B:S.262, B:K.265 GOL.12: 3 residues within 4Å: Chain B: H.12, R.16, S.273 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.16, B:S.273

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, X.-L. et al., Crystal structure of a human aminoacyl-tRNA synthetase cytokine. Proc.Natl.Acad.Sci.USA (2002)

Release Date

2002-11-20

Peptides

tyrosyl-tRNA synthetase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

tyrosyl-tRNA synthetase

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