SMTL ID : 1n4u.1

CHOLESTEROL OXIDASE FROM STREPTOMYCES @ pH 4.5 (STREPTOMYCES SP. SA-COO)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 0.95 Å

Oligo State

monomer

Ligands

5 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 7 residues within 4Å: Chain A: E.174, Q.175, K.178, H.326, W.328, N.329, N.419 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:Q.175, A:W.328, A:N.329, A:N.329, A:N.419 Water bridges: A:H.326 Salt bridges: A:K.178 PO4.2: 6 residues within 4Å: Chain A: D.134, E.137, Y.142, Y.456, R.491, R.495 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:Y.456, A:Y.456 Water bridges: A:Y.456, A:R.491, A:R.491, A:R.491, A:R.495, A:R.495 Salt bridges: A:R.491, A:R.495 PO4.3: 2 residues within 4Å: Chain A: R.141, R.145 6 PLIP interactions: 6 interactions with chain A Water bridges: A:R.141, A:R.145, A:R.145, A:R.145 Salt bridges: A:R.141, A:R.145 PO4.4: 4 residues within 4Å: Chain A: R.249, T.251, K.252, D.253 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:T.251, A:T.251, A:K.252, A:D.253, A:D.253 Salt bridges: A:R.249 PO4.5: 4 residues within 4Å: Chain A: I.239, Q.240, T.241, H.243 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:T.241, A:T.241 Water bridges: A:T.241, A:T.241, A:H.243 Salt bridges: A:H.243

1 x FAE: FLAVIN-N7 PROTONATED-ADENINE DINUCLEOTIDE(Non-covalent)

FAE.6: 45 residues within 4Å: Chain A: I.11, G.12, T.13, G.14, Y.15, G.16, A.17, L.34, E.35, M.36, G.37, L.91, Y.102, V.103, G.104, R.105, G.106, G.109, G.110, S.111, V.113, N.114, G.115, G.116, M.117, I.213, H.243, Q.244, V.245, G.283, A.284, G.285, S.286, G.288, L.292, Y.441, H.442, P.443, D.469, G.470, N.480, P.481, F.482, V.483, I.485 36 PLIP interactions: 36 interactions with chain A Hydrophobic interactions: A:Y.102, A:V.113, A:I.213, A:Y.441, A:Y.441 Hydrogen bonds: A:G.12, A:T.13, A:T.13, A:G.14, A:Y.15, A:G.16, A:E.35, A:M.36, A:R.105, A:G.106, A:G.109, A:G.110, A:N.114, A:G.115, A:M.117, A:M.117, A:V.245, A:V.245, A:G.470, A:N.480, A:F.482 Water bridges: A:G.104, A:Q.244, A:Q.244, A:Q.244, A:S.286, A:S.286, A:G.288, A:H.442, A:H.442, A:V.483

1 x OXY: OXYGEN MOLECULE(Non-covalent)

OXY.7: 6 residues within 4Å: Chain A: M.117, F.354, A.355, E.356, I.374, N.480 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.480 Water bridges: A:E.356, A:E.356

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.8: 12 residues within 4Å: Chain A: M.53, P.70, L.71, V.212, I.213, M.320, A.358, P.359, M.360, P.361, L.370, Y.441 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.441

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lyubimov, A.Y. et al., Atomic resolution crystallography reveals how changes in pH shape the protein microenvironment. Nat.Chem.Biol. (2006)

Release Date

2004-04-27

Peptides

Cholesterol oxidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cholesterol oxidase

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