- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.50 Å
- Oligo State
- hetero-oligomer
- Ligands
- 1 x PO4: PHOSPHATE ION(Non-functional Binders)
- 4 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)
- 2 x CUM: CU(I)-S-MO(VI)(=O)OH CLUSTER(Non-covalent)
CUM.4: 13 residues within 4Å:- Chain B: Q.240, F.271, G.272, V.384, A.385, Y.386, R.387, C.388, S.389, Y.568, G.569, E.763
- Ligands: MCN.5
6 PLIP interactions:5 interactions with chain B, 1 Ligand-Water interactions- Hydrogen bonds: B:Q.240, B:G.569
- Water bridges: B:F.271, B:S.389
- Metal complexes: B:C.388, H2O.590
CUM.8: 13 residues within 4Å:- Chain E: Q.240, F.271, G.272, V.384, A.385, Y.386, R.387, C.388, S.389, Y.568, G.569, E.763
- Ligands: MCN.9
4 PLIP interactions:3 interactions with chain E, 1 Ligand-Water interactions- Hydrogen bonds: E:Q.240, E:G.569
- Metal complexes: E:C.388, H2O.1845
- 2 x MCN: PTERIN CYTOSINE DINUCLEOTIDE(Non-covalent)
MCN.5: 36 residues within 4Å:- Chain A: Q.101, C.139
- Chain B: G.269, G.270, F.271, G.272, R.387, Q.528, G.529, Q.530, G.531, H.532, T.535, T.567, Y.568, G.569, S.570, R.571, S.572, T.573, P.574, C.686, T.688, R.689, I.690, N.691, I.694, I.695, Q.698, A.758, K.759, G.760, V.761, G.762, E.763
- Ligands: CUM.4
22 PLIP interactions:21 interactions with chain B, 1 interactions with chain A- Hydrophobic interactions: B:V.761
- Hydrogen bonds: B:G.270, B:F.271, B:Q.528, B:T.535, B:T.535, B:S.572, B:S.572, B:T.573, B:T.573, B:T.688, B:I.690, B:N.691, B:Q.698, B:K.759, B:V.761, B:G.762, A:Q.101
- Water bridges: B:R.387, B:R.387, B:Q.528
- Salt bridges: B:H.532
MCN.9: 35 residues within 4Å:- Chain D: Q.101, C.139
- Chain E: G.269, G.270, F.271, G.272, R.387, Q.528, G.529, Q.530, G.531, H.532, T.535, T.567, Y.568, G.569, S.570, R.571, S.572, T.573, C.686, T.688, R.689, I.690, N.691, I.694, I.695, Q.698, A.758, K.759, G.760, V.761, G.762, E.763
- Ligands: CUM.8
26 PLIP interactions:25 interactions with chain E, 1 interactions with chain D- Hydrophobic interactions: E:V.761
- Hydrogen bonds: E:G.270, E:F.271, E:Q.528, E:Q.530, E:T.535, E:S.572, E:S.572, E:S.572, E:T.573, E:T.573, E:T.688, E:I.690, E:N.691, E:Q.698, E:K.759, E:V.761, E:G.762, D:Q.101
- Water bridges: E:R.387, E:R.387, E:Q.528, E:T.535, E:T.535, E:T.535
- Salt bridges: E:H.532
- 2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
FAD.10: 14 residues within 4Å:- Chain D: S.45, H.46
- Chain F: H.35, L.100, I.101, A.102, I.106, N.115, N.123, D.124, K.185, G.191, D.192, Y.193
8 PLIP interactions:8 interactions with chain F- Hydrophobic interactions: F:A.102, F:I.106
- Hydrogen bonds: F:A.102, F:N.115, F:D.124, F:D.124, F:K.185, F:Y.193
FAD.11: 14 residues within 4Å:- Chain A: S.45, H.46
- Chain C: H.35, L.100, I.101, A.102, I.106, N.115, N.123, D.124, K.185, G.191, D.192, Y.193
11 PLIP interactions:11 interactions with chain C- Hydrophobic interactions: C:A.102, C:I.106
- Hydrogen bonds: C:A.102, C:N.115, C:N.123, C:D.124, C:D.124, C:D.124, C:K.185, C:Y.193
- pi-Stacking: C:Y.193
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Dobbek, H. et al., Catalysis at a dinuclear [CuSMo(=O)OH] cluster in a CO dehydrogenase resolved at 1.1-A resolution. Proc.Natl.Acad.Sci.USA (2002)
- Release Date
- 2002-12-23
- Peptides
- Carbon monoxide dehydrogenase small chain: AD
Carbon monoxide dehydrogenase large chain: BE
Carbon monoxide dehydrogenase medium chain: CF - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AD
DB
BE
EC
CF
F
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.50 Å
- Oligo State
- hetero-oligomer
- Ligands
- 1 x PO4: PHOSPHATE ION(Non-functional Binders)
- 4 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)
- 2 x CUM: CU(I)-S-MO(VI)(=O)OH CLUSTER(Non-covalent)
- 2 x MCN: PTERIN CYTOSINE DINUCLEOTIDE(Non-covalent)
- 2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Dobbek, H. et al., Catalysis at a dinuclear [CuSMo(=O)OH] cluster in a CO dehydrogenase resolved at 1.1-A resolution. Proc.Natl.Acad.Sci.USA (2002)
- Release Date
- 2002-12-23
- Peptides
- Carbon monoxide dehydrogenase small chain: AD
Carbon monoxide dehydrogenase large chain: BE
Carbon monoxide dehydrogenase medium chain: CF - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AD
DB
BE
EC
CF
F