- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.09 Å
- Oligo State
- hetero-oligomer
- Ligands
- 1 x PO4: PHOSPHATE ION(Non-functional Binders)
- 4 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)
- 2 x CUB: CU(I)-S-MO(IV)(=O)O-NBIC CLUSTER(Non-covalent)
CUB.4: 16 residues within 4Å:- Chain B: Q.240, F.271, G.272, V.275, A.346, V.384, A.385, Y.386, R.387, C.388, S.389, F.390, Y.568, G.569, E.763
- Ligands: MCN.5
13 PLIP interactions:13 interactions with chain B,- Hydrophobic interactions: B:V.275, B:A.346, B:V.384, B:F.390, B:Y.568
- Hydrogen bonds: B:Q.240, B:Q.240, B:S.389, B:F.390, B:G.569
- Water bridges: B:Q.528
- Salt bridges: B:E.763
- Metal complexes: B:C.388
CUB.8: 16 residues within 4Å:- Chain E: Q.240, F.271, G.272, V.275, A.346, V.384, A.385, Y.386, R.387, C.388, S.389, F.390, Y.568, G.569, E.763
- Ligands: MCN.9
12 PLIP interactions:12 interactions with chain E,- Hydrophobic interactions: E:V.275, E:A.346, E:V.384, E:F.390
- Hydrogen bonds: E:Q.240, E:Q.240, E:S.389, E:F.390, E:G.569
- Water bridges: E:Q.528
- Salt bridges: E:E.763
- Metal complexes: E:C.388
- 2 x MCN: PTERIN CYTOSINE DINUCLEOTIDE(Non-covalent)
MCN.5: 36 residues within 4Å:- Chain A: Q.101, C.139
- Chain B: G.269, G.270, F.271, G.272, R.387, Q.528, G.529, Q.530, G.531, H.532, T.535, T.567, Y.568, G.569, S.570, R.571, S.572, T.573, P.574, C.686, T.688, R.689, I.690, N.691, I.694, I.695, Q.698, A.758, K.759, G.760, V.761, G.762, E.763
- Ligands: CUB.4
27 PLIP interactions:25 interactions with chain B, 2 interactions with chain A- Hydrophobic interactions: B:T.573, B:V.761
- Hydrogen bonds: B:G.270, B:F.271, B:Q.528, B:T.535, B:T.535, B:R.571, B:S.572, B:S.572, B:T.573, B:T.573, B:T.688, B:I.690, B:N.691, B:Q.698, B:K.759, B:V.761, B:G.762, A:Q.101, A:C.102
- Water bridges: B:R.387, B:R.387, B:Q.528, B:Y.536, B:Y.536
- Salt bridges: B:H.532
MCN.9: 36 residues within 4Å:- Chain D: Q.101, C.139
- Chain E: G.269, G.270, F.271, G.272, R.387, Q.528, G.529, Q.530, G.531, H.532, T.535, T.567, Y.568, G.569, S.570, R.571, S.572, T.573, P.574, C.686, T.688, R.689, I.690, N.691, I.694, I.695, Q.698, A.758, K.759, G.760, V.761, G.762, E.763
- Ligands: CUB.8
27 PLIP interactions:2 interactions with chain D, 25 interactions with chain E- Hydrogen bonds: D:Q.101, D:C.102, E:G.270, E:F.271, E:Q.528, E:Q.530, E:T.535, E:R.571, E:S.572, E:S.572, E:T.573, E:T.573, E:T.688, E:I.690, E:N.691, E:Q.698, E:K.759, E:V.761, E:G.762
- Hydrophobic interactions: E:V.761
- Water bridges: E:R.387, E:R.387, E:Q.528, E:T.535, E:T.535, E:T.535
- Salt bridges: E:H.532
- 2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
FAD.10: 33 residues within 4Å:- Chain D: T.44, S.45, H.46
- Chain F: R.29, P.30, L.31, A.32, G.33, G.34, H.35, S.36, L.37, L.54, A.74, L.100, I.101, A.102, I.106, G.110, T.111, G.114, N.115, A.117, N.118, N.123, D.124, I.161, L.166, L.167, K.185, G.191, D.192, Y.193
26 PLIP interactions:26 interactions with chain F- Hydrophobic interactions: F:A.102, F:I.106, F:I.106
- Hydrogen bonds: F:R.29, F:P.30, F:A.32, F:G.33, F:G.34, F:H.35, F:S.36, F:S.36, F:L.37, F:A.102, F:T.111, F:N.115, F:N.123, F:D.124, F:D.124, F:L.167, F:L.167, F:K.185
- Water bridges: F:R.29, F:T.111, F:N.118, F:N.118, F:Y.193
FAD.11: 31 residues within 4Å:- Chain A: S.45, H.46
- Chain C: R.29, P.30, L.31, A.32, G.33, G.34, H.35, S.36, L.37, A.74, L.100, I.101, A.102, I.106, G.110, T.111, G.114, N.115, A.117, N.118, N.123, D.124, I.161, L.166, L.167, K.185, G.191, D.192, Y.193
24 PLIP interactions:24 interactions with chain C- Hydrophobic interactions: C:A.102, C:I.106, C:I.106
- Hydrogen bonds: C:R.29, C:P.30, C:A.32, C:G.33, C:G.34, C:H.35, C:S.36, C:S.36, C:L.37, C:A.102, C:T.111, C:N.115, C:N.123, C:D.124, C:D.124, C:D.124, C:L.167, C:L.167, C:K.185
- Water bridges: C:R.29, C:N.118
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Dobbek, H. et al., Catalysis at a dinuclear [CuSMo(=O)OH] cluster in a CO dehydrogenase resolved at 1.1-A resolution. Proc.Natl.Acad.Sci.USA (2002)
- Release Date
- 2002-12-18
- Peptides
- Carbon monoxide dehydrogenase small chain: AD
Carbon monoxide dehydrogenase large chain: BE
Carbon monoxide dehydrogenase medium chain: CF - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AD
DB
BE
EC
CF
F
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.09 Å
- Oligo State
- hetero-oligomer
- Ligands
- 1 x PO4: PHOSPHATE ION(Non-functional Binders)
- 4 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)
- 2 x CUB: CU(I)-S-MO(IV)(=O)O-NBIC CLUSTER(Non-covalent)
- 2 x MCN: PTERIN CYTOSINE DINUCLEOTIDE(Non-covalent)
- 2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Dobbek, H. et al., Catalysis at a dinuclear [CuSMo(=O)OH] cluster in a CO dehydrogenase resolved at 1.1-A resolution. Proc.Natl.Acad.Sci.USA (2002)
- Release Date
- 2002-12-18
- Peptides
- Carbon monoxide dehydrogenase small chain: AD
Carbon monoxide dehydrogenase large chain: BE
Carbon monoxide dehydrogenase medium chain: CF - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AD
DB
BE
EC
CF
F