SMTL ID : 1n6n.1

Crystal Structure of Human Rab5a A30R mutant complex with GppNHp

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: S.20, T.38 Ligands: GNP.2 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:S.20, A:T.38, H2O.1, H2O.1

1 x GNP: PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER(Non-covalent)

GNP.2: 24 residues within 4Å: Chain A: E.14, S.15, R.16, V.17, G.18, K.19, S.20, S.21, F.31, H.32, E.33, Q.35, S.37, T.38, A.63, G.64, N.119, K.120, D.122, L.123, S.149, A.150, K.151 Ligands: MG.1 32 PLIP interactions: 32 interactions with chain A Hydrogen bonds: A:S.15, A:R.16, A:V.17, A:G.18, A:K.19, A:K.19, A:S.20, A:S.21, A:S.21, A:H.32, A:E.33, A:T.38, A:G.64, A:N.119, A:K.120, A:K.120, A:A.150, A:K.151 Water bridges: A:S.20, A:S.20, A:E.33, A:E.33, A:Q.35, A:T.38, A:T.38, A:Q.65, A:Q.65, A:K.151 Salt bridges: A:E.33, A:D.122 pi-Stacking: A:F.31, A:F.31

1 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)

BME.3: 5 residues within 4Å: Chain A: G.1, C.49, D.52, T.53, T.54 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.1, A:D.52

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhu, G. et al., High Resolution Crystal Structures of Human Rab5a and Five Mutants with Substitutions in the Catalytically Important Phosphate-Binding Loop. J.Biol.Chem. (2003)

Release Date

2002-11-27

Peptides

Ras-related protein Rab-5A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Ras-related protein Rab-5A