- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.90 Å
- Oligo State
- hetero-2-2-2-mer
- Ligands
- 4 x GLY- HIS- ARG- PRO: peptide ligand: Gly-his-Arg-Pro-amide(Non-covalent)
- 4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG.5: 4 residues within 4Å:- Chain B: M.225, G.226, N.228
- Ligands: GLY-HIS-ARG-PRO.3
2 PLIP interactions:2 interactions with chain B- Hydrophobic interactions: B:M.225
- Hydrogen bonds: B:N.228
NAG.7: 1 residues within 4Å:- Chain C: N.125
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:N.125
NAG.9: 4 residues within 4Å:- Chain E: M.225, G.226, N.228
- Ligands: GLY-HIS-ARG-PRO.4
2 PLIP interactions:2 interactions with chain E- Hydrophobic interactions: E:M.225
- Hydrogen bonds: E:N.228
NAG.11: 2 residues within 4Å:- Chain F: N.125, T.127
2 PLIP interactions:2 interactions with chain F- Hydrogen bonds: F:N.125, F:T.127
- 4 x CA: CALCIUM ION(Non-covalent)
CA.6: 5 residues within 4Å:- Chain B: D.245, D.247, W.249, N.250, K.256
4 PLIP interactions:4 interactions with chain B- Metal complexes: B:D.245, B:D.247, B:W.249, B:K.256
CA.8: 5 residues within 4Å:- Chain C: D.238, D.240, Y.242, E.243, G.244
5 PLIP interactions:5 interactions with chain C- Metal complexes: C:D.238, C:D.238, C:D.240, C:Y.242, C:G.244
CA.10: 5 residues within 4Å:- Chain E: D.245, D.247, W.249, N.250, K.256
4 PLIP interactions:4 interactions with chain E- Metal complexes: E:D.245, E:D.247, E:W.249, E:K.256
CA.12: 4 residues within 4Å:- Chain F: D.238, D.240, Y.242, G.244
5 PLIP interactions:5 interactions with chain F- Metal complexes: F:D.238, F:D.238, F:D.240, F:Y.242, F:G.244
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Yang, Z. et al., The Crystal structure of fragment double-D from cross-linked lamprey fibrin reveals isopeptide linkages across an unexpected D-D interface. Biochemistry (2002)
- Release Date
- 2003-01-07
- Peptides
- Fibrin alpha-1 chain: AD
Fibrin beta chain: BE
Fibrin gamma chain: CF - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AD
DB
BE
EC
CF
F
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.90 Å
- Oligo State
- hetero-2-2-2-mer
- Ligands
- 4 x GLY- HIS- ARG- PRO: peptide ligand: Gly-his-Arg-Pro-amide(Non-covalent)
- 4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 4 x CA: CALCIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Yang, Z. et al., The Crystal structure of fragment double-D from cross-linked lamprey fibrin reveals isopeptide linkages across an unexpected D-D interface. Biochemistry (2002)
- Release Date
- 2003-01-07
- Peptides
- Fibrin alpha-1 chain: AD
Fibrin beta chain: BE
Fibrin gamma chain: CF - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AD
DB
BE
EC
CF
F