SMTL ID : 1n7v.1

THE RECEPTOR-BINDING PROTEIN P2 OF BACTERIOPHAGE PRD1: CRYSTAL FORM III

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

4 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 3 residues within 4Å: Chain A: Q.39, L.51, H.52 4 PLIP interactions: 4 interactions with chain A Water bridges: A:Q.39, A:A.53, A:Y.357 Salt bridges: A:H.52 ACT.2: 2 residues within 4Å: Chain A: G.373, A.374 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:A.374 Water bridges: A:G.401 ACT.4: 3 residues within 4Å: Chain B: Q.39, L.51, H.52 4 PLIP interactions: 4 interactions with chain B Water bridges: B:Y.43, B:H.52, B:Y.357 Salt bridges: B:H.52 ACT.5: 2 residues within 4Å: Chain B: G.373, A.374 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:A.374 Water bridges: B:G.401

2 x CA: CALCIUM ION(Non-covalent)

CA.3: 3 residues within 4Å: Chain A: D.424, K.425, S.461 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:K.425, A:S.461, H2O.6, H2O.6, H2O.9 CA.6: 3 residues within 4Å: Chain B: D.424, K.425, S.461 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:K.425, B:S.461, H2O.15, H2O.15, H2O.18

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xu, L. et al., The Receptor Binding Protein P2 of PRD1, a Virus Targeting Antibiotic-Resistant Bacteria, Has a Novel Fold Suggesting Multiple Functions. Structure (2003)

Release Date

2003-04-08

Peptides

Adsorption protein P2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Adsorption protein P2