SMTL ID : 1n82.1 (1 other biounit)

The high-resolution crystal structure of IXT6, a thermophilic, intracellular xylanase from G. stearothermophilus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

monomer

Ligands

1 x NA: SODIUM ION(Non-functional Binders)

NA.1: 4 residues within 4Å: Chain A: D.15, R.282, I.285, Q.286 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.286 Water bridges: A:Q.286

9 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: P.184, R.187, D.221, E.222, A.225 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.187, A:R.187 Water bridges: A:D.221 GOL.3: 6 residues within 4Å: Chain A: A.13, N.14, D.15, F.16, R.17, Q.286 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.17, A:Q.286 Water bridges: A:N.39 GOL.4: 6 residues within 4Å: Chain A: K.123, G.124, K.125, I.126, Y.127, D.169 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.124, A:I.126, A:D.169 Water bridges: A:D.169, A:D.171 GOL.5: 3 residues within 4Å: Chain A: Y.166, P.170, D.171 1 PLIP interactions: 1 interactions with chain A Water bridges: A:D.171 GOL.6: 6 residues within 4Å: Chain A: N.2, L.5, P.6, S.7, D.36, H.37 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:L.5, A:D.36 Water bridges: A:S.7, A:R.9, A:D.36, A:D.36 GOL.7: 6 residues within 4Å: Chain A: D.155, D.156, E.159, L.193, S.196, L.197 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.159, A:S.196 GOL.8: 8 residues within 4Å: Chain A: W.85, E.134, Y.179, Q.210, H.212, E.241, W.291, W.299 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:E.134, A:Q.210, A:W.291 Water bridges: A:N.87, A:N.133, A:E.134 GOL.9: 3 residues within 4Å: Chain A: D.65, D.69, R.121 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.69, A:R.121 Water bridges: A:D.65, A:D.69, A:D.69 GOL.10: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Solomon, V. et al., The high-resolution crystal structure of IXT6, a thermophilic, intracellular xylanase from G. stearothermophilus. To be Published

Release Date

2003-11-25

Peptides

intra-cellular xylanase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

intra-cellular xylanase

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