SMTL ID : 1nc2.2 (1 other biounit)

Crystal Structure of Monoclonal Antibody 2D12.5 Fab Complexed with Y-DOTA

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

hetero-1-1-mer

Ligands

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 1 residues within 4Å: Ligands: DOE.4 Ligand excluded by PLIP

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 3 residues within 4Å: Chain B: R.38, K.43, N.88 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:K.43, B:N.88 Water bridges: B:R.38, B:N.88

1 x YT3: YTTRIUM (III) ION(Non-functional Binders)

YT3.3: 1 residues within 4Å: Ligands: DOE.4 No protein-ligand interaction detected (PLIP)

1 x DOE: (S)-2-(4-(2-(2-HYDROXYETHYLTHIO)-ACETAMIDO)-BENZYL)-1,4,7,10-TETRAAZACYCLODODECANE-N,N',N'',N'''-TETRAACETATE(Non-covalent)

DOE.4: 13 residues within 4Å: Chain A: Y.34, W.93, W.98 Chain B: H.35, W.52, S.53, G.54, R.98, S.100, Y.101, N.104 Ligands: CL.1, YT3.3 16 PLIP interactions: 12 interactions with chain B, 4 interactions with chain A Hydrogen bonds: B:Y.101, B:N.104, A:W.98 Water bridges: B:S.53, B:S.53, B:S.53, B:G.54, B:G.54, B:R.98, B:R.98 Salt bridges: B:H.35, B:R.98, B:R.98 pi-Cation interactions: A:Y.34, A:W.93, A:W.93

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Corneillie, T.M. et al., Crystal structures of two complexes of the rare-earth-DOTA-binding antibody 2D12.5: ligand generality from a chiral system. J.Am.Chem.Soc. (2003)

Release Date

2003-12-16

Peptides

MONOCLONAL ANTIBODY 2D12.5, LAMBDA LIGHT CHAIN: A
MONOCLONAL ANTIBODY 2D12.5, IGG1 GAMMA HEAVY CHAIN: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

MONOCLONAL ANTIBODY 2D12.5, LAMBDA LIGHT CHAIN

MONOCLONAL ANTIBODY 2D12.5, IGG1 GAMMA HEAVY CHAIN

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