SMTL ID : 1nc7.1

Crystal Structure of Thermotoga maritima 1070

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

homo-tetramer

Ligands

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 9 residues within 4Å: Chain A: M.128, T.129 Chain B: M.128, T.129 Chain C: M.128, T.129 Chain D: M.128, T.129 Ligands: MG.2 Ligand excluded by PLIP CL.10: 9 residues within 4Å: Chain A: T.129, T.130 Chain B: T.129, T.130 Chain C: T.129, T.130 Chain D: T.129, T.130 Ligands: MG.2 Ligand excluded by PLIP

4 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 6 residues within 4Å: Chain A: T.129 Chain B: T.129 Chain C: T.129 Chain D: T.129 Ligands: CL.1, CL.10 4 PLIP interactions: 1 interactions with chain A, 1 interactions with chain D, 1 interactions with chain C, 1 interactions with chain B Metal complexes: A:T.129, D:T.129, C:T.129, B:T.129 MG.3: 4 residues within 4Å: Chain A: L.127 Chain B: L.127 Chain C: L.127 Chain D: L.127 4 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B, 1 interactions with chain C, 1 interactions with chain D Metal complexes: A:L.127, B:L.127, C:L.127, D:L.127 MG.4: 5 residues within 4Å: Chain A: Y.125 Chain B: Y.125 Chain C: Y.125 Chain D: Y.125 Ligands: MG.5 No protein-ligand interaction detected (PLIP) MG.5: 8 residues within 4Å: Chain A: Y.125, T.126 Chain B: Y.125, T.126 Chain C: T.126 Chain D: Y.125, T.126 Ligands: MG.4 4 PLIP interactions: 1 interactions with chain A, 1 interactions with chain C, 1 interactions with chain D, 1 interactions with chain B Metal complexes: A:T.126, C:T.126, D:T.126, B:T.126

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.6: 5 residues within 4Å: Chain A: N.24, T.55, M.83 Chain B: M.104, E.106 4 PLIP interactions: 1 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:E.106, A:N.24, A:T.55, A:T.55 EDO.8: 6 residues within 4Å: Chain A: H.47, S.49, S.116, L.127 Chain B: D.33, R.117 5 PLIP interactions: 3 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:D.33, B:R.117, B:R.117, A:H.47, A:S.49 EDO.11: 6 residues within 4Å: Chain C: H.47, S.49, S.116, L.127 Chain D: D.33, R.117 5 PLIP interactions: 2 interactions with chain C, 3 interactions with chain D Hydrogen bonds: C:H.47, C:S.49, D:D.33, D:R.117, D:R.117

4 x FMT: FORMIC ACID(Non-functional Binders)

FMT.7: 2 residues within 4Å: Chain A: E.136, G.137 No protein-ligand interaction detected (PLIP) FMT.9: 6 residues within 4Å: Chain C: M.23, N.54, G.56, D.57, E.58, V.109 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:N.54, C:D.57, C:D.57, C:E.58 Water bridges: C:G.56, C:G.56 FMT.12: 4 residues within 4Å: Chain A: N.123 Chain D: R.41, H.124, Y.125 4 PLIP interactions: 3 interactions with chain D, 1 interactions with chain A Hydrogen bonds: D:R.41, D:R.41 Water bridges: D:Y.125, A:Y.125 FMT.13: 5 residues within 4Å: Chain D: M.23, R.27, N.108, V.109, P.110 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:N.108

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, Y. et al., Crystal Structure Analysis of Thermotoga maritima Hypothetical protein TM1070. To be Published

Release Date

2003-07-01

Peptides

hypothetical protein TM1070: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

hypothetical protein TM1070