SMTL ID : 1nd0.5 (5 other biounits)

CATIONIC CYCLIZATION ANTIBODY 4C6 COMPLEX WITH TRANSITION STATE ANALOG

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.45 Å

Oligo State

hetero-1-1-mer

Ligands

1 x DP4: (1s,4s)-4-[dimethyl(phenyl)silyl]-1-methylpiperidine 1-oxide(Non-covalent)

DP4.1: 10 residues within 4Å: Chain A: N.39, W.94, Q.95, G.96, Y.101 Chain B: A.34, Y.51, L.99, W.101, G.104 6 PLIP interactions: 3 interactions with chain B, 3 interactions with chain A Hydrophobic interactions: B:W.101, A:W.94, A:W.94 Hydrogen bonds: B:Y.51 pi-Cation interactions: B:W.101, A:F.37

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 1 residues within 4Å: Chain B: R.72 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.72

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhu, X. et al., Structural Basis for Antibody Catalysis of a Cationic Cyclization Reaction. J.Mol.Biol. (2003)

Release Date

2003-05-13

Peptides

IMMUNOGLOBULIN IGG2A: A
IMMUNOGLOBULIN IGG2A: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
F

IMMUNOGLOBULIN IGG2A

IMMUNOGLOBULIN IGG2A

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