SMTL ID : 1ne8.1

YDCE protein from Bacillus subtilis

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

4 x 1PG: 2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL(Non-covalent)

1PG.1: 6 residues within 4Å: Chain A: E.106, Q.109, D.116, F.117 Chain B: I.115, D.116 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.106, A:Q.109 Water bridges: A:D.105 1PG.2: 5 residues within 4Å: Chain A: D.13, S.15, Q.87, R.88 Chain B: V.18 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.15 1PG.5: 6 residues within 4Å: Chain A: I.115, D.116 Chain B: E.106, Q.109, D.116, F.117 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.106, B:E.106, B:Q.109 1PG.6: 5 residues within 4Å: Chain A: V.18 Chain B: D.13, S.15, Q.87, R.88 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:D.13, B:S.15

4 x ACY: ACETIC ACID(Non-functional Binders)

ACY.3: 5 residues within 4Å: Chain A: F.11, P.27, F.70, E.71, I.93 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:F.11, A:P.27, A:F.70, A:I.93 Hydrogen bonds: A:E.71 ACY.4: 2 residues within 4Å: Chain A: K.92, I.93 3 PLIP interactions: 3 interactions with chain A Water bridges: A:K.92, A:K.92 Salt bridges: A:K.92 ACY.7: 5 residues within 4Å: Chain B: F.11, P.27, F.70, E.71, I.93 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:F.11, B:P.27, B:F.70, B:I.93 Hydrogen bonds: B:E.71 Water bridges: B:E.71, B:E.71 ACY.8: 2 residues within 4Å: Chain B: K.92, I.93 3 PLIP interactions: 3 interactions with chain B Water bridges: B:K.92, B:K.92 Salt bridges: B:K.92

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gogos, A. et al., Crystal structure of YdcE protein from Bacillus subtilis. PROTEINS: STRUCT.,FUNCT.,GENET. (2003)

Release Date

2003-01-14

Peptides

conserved hypothetical protein YDCE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

conserved hypothetical protein YDCE