- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.65 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x K: POTASSIUM ION(Non-covalent)
- 4 x RVP: RIBAVIRIN MONOPHOSPHATE(Non-covalent)
RVP.2: 24 residues within 4Å:- Chain A: S.68, M.70, N.303, R.322, S.327, G.328, S.329, I.330, C.331, D.364, G.365, G.366, M.385, M.386, G.387, S.388, Y.411, G.413, M.414, G.415, S.416, Q.441, G.442
- Ligands: MYD.3
15 PLIP interactions:15 interactions with chain A- Hydrogen bonds: A:S.68, A:N.303, A:S.329, A:G.366, A:G.387, A:S.388, A:S.388, A:M.414, A:G.415, A:Q.441
- Water bridges: A:G.328, A:I.367, A:S.388, A:S.388, A:S.388
RVP.5: 24 residues within 4Å:- Chain B: S.68, M.70, N.303, R.322, S.327, G.328, S.329, I.330, C.331, D.364, G.365, G.366, M.385, M.386, G.387, S.388, Y.411, G.413, M.414, G.415, S.416, Q.441, G.442
- Ligands: MYD.6
15 PLIP interactions:15 interactions with chain B- Hydrogen bonds: B:S.68, B:N.303, B:S.329, B:G.366, B:G.387, B:S.388, B:S.388, B:M.414, B:G.415, B:Q.441
- Water bridges: B:G.328, B:I.367, B:S.388, B:S.388, B:S.388
RVP.8: 24 residues within 4Å:- Chain C: S.68, M.70, N.303, R.322, S.327, G.328, S.329, I.330, C.331, D.364, G.365, G.366, M.385, M.386, G.387, S.388, Y.411, G.413, M.414, G.415, S.416, Q.441, G.442
- Ligands: MYD.9
15 PLIP interactions:15 interactions with chain C- Hydrogen bonds: C:S.68, C:N.303, C:S.329, C:G.366, C:G.387, C:S.388, C:S.388, C:M.414, C:G.415, C:Q.441
- Water bridges: C:G.328, C:I.367, C:S.388, C:S.388, C:S.388
RVP.11: 24 residues within 4Å:- Chain D: S.68, M.70, N.303, R.322, S.327, G.328, S.329, I.330, C.331, D.364, G.365, G.366, M.385, M.386, G.387, S.388, Y.411, G.413, M.414, G.415, S.416, Q.441, G.442
- Ligands: MYD.12
15 PLIP interactions:15 interactions with chain D- Hydrogen bonds: D:S.68, D:N.303, D:S.329, D:G.366, D:G.387, D:S.388, D:S.388, D:M.414, D:G.415, D:Q.441
- Water bridges: D:G.328, D:I.367, D:S.388, D:S.388, D:S.388
- 4 x MYD: {[5-(6-AMINO-PURIN-7-YL)-3,4-DIHYDROXY-TETRAHYDRO-FURAN-2-YLMETHOXY]-HYDROXY-PHOSPHORYLMETHYL}-PHOSPHONIC ACID MONO-[2-(4-HYDROXY-6-METHOXY-7-METHYL-3-OXO-1,3-DIHYDRO-ISOBENZOFURAN-5-YL)-ETHYL] ESTER(Non-covalent)
MYD.3: 18 residues within 4Å:- Chain A: T.252, H.253, D.274, S.275, S.276, F.282, N.303, R.322, G.324, M.325, G.326, C.331, T.333, G.415, Q.441
- Chain D: T.45, Q.469
- Ligands: RVP.2
14 PLIP interactions:13 interactions with chain A, 1 interactions with chain D- Hydrogen bonds: A:T.252, A:T.252, A:D.274, A:S.276, A:G.326, A:T.333, A:Q.441, D:Q.469
- Water bridges: A:S.276, A:K.438
- pi-Stacking: A:H.253, A:H.253, A:F.282, A:F.282
MYD.6: 18 residues within 4Å:- Chain B: T.252, H.253, D.274, S.275, S.276, F.282, N.303, R.322, G.324, M.325, G.326, C.331, T.333, G.415, Q.441
- Chain C: T.45, Q.469
- Ligands: RVP.5
14 PLIP interactions:13 interactions with chain B, 1 interactions with chain C- Hydrogen bonds: B:T.252, B:T.252, B:D.274, B:S.276, B:G.326, B:T.333, B:Q.441, C:Q.469
- Water bridges: B:S.276, B:K.438
- pi-Stacking: B:H.253, B:H.253, B:F.282, B:F.282
MYD.9: 18 residues within 4Å:- Chain A: T.45, Q.469
- Chain C: T.252, H.253, D.274, S.275, S.276, F.282, N.303, R.322, G.324, M.325, G.326, C.331, T.333, G.415, Q.441
- Ligands: RVP.8
14 PLIP interactions:1 interactions with chain A, 13 interactions with chain C- Hydrogen bonds: A:Q.469, C:T.252, C:T.252, C:D.274, C:S.276, C:G.326, C:T.333, C:Q.441
- Water bridges: C:S.276, C:K.438
- pi-Stacking: C:H.253, C:H.253, C:F.282, C:F.282
MYD.12: 18 residues within 4Å:- Chain B: T.45, Q.469
- Chain D: T.252, H.253, D.274, S.275, S.276, F.282, N.303, R.322, G.324, M.325, G.326, C.331, T.333, G.415, Q.441
- Ligands: RVP.11
14 PLIP interactions:13 interactions with chain D, 1 interactions with chain B- Hydrogen bonds: D:T.252, D:T.252, D:D.274, D:S.276, D:G.326, D:T.333, D:Q.441, B:Q.469
- Water bridges: D:S.276, D:K.438
- pi-Stacking: D:H.253, D:H.253, D:F.282, D:F.282
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Risal, D. et al., Crystal Structure of Human Inosine Monophosphate Dehydrogenase type II complexed with the MPA/NAD analog C2-MAD. To be Published
- Release Date
- 2004-01-27
- Peptides
- Inosine-5'-monophosphate dehydrogenase 2: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.65 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x K: POTASSIUM ION(Non-covalent)
- 4 x RVP: RIBAVIRIN MONOPHOSPHATE(Non-covalent)
- 4 x MYD: {[5-(6-AMINO-PURIN-7-YL)-3,4-DIHYDROXY-TETRAHYDRO-FURAN-2-YLMETHOXY]-HYDROXY-PHOSPHORYLMETHYL}-PHOSPHONIC ACID MONO-[2-(4-HYDROXY-6-METHOXY-7-METHYL-3-OXO-1,3-DIHYDRO-ISOBENZOFURAN-5-YL)-ETHYL] ESTER(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Risal, D. et al., Crystal Structure of Human Inosine Monophosphate Dehydrogenase type II complexed with the MPA/NAD analog C2-MAD. To be Published
- Release Date
- 2004-01-27
- Peptides
- Inosine-5'-monophosphate dehydrogenase 2: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A