SMTL ID : 1nf9.1

Crystal Structure of PhzD protein from Pseudomonas aeruginosa

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-dimer

Ligands

2 x BOG: octyl beta-D-glucopyranoside(Non-covalent)

BOG.1: 9 residues within 4Å: Chain A: H.153, F.180, H.184, M.187, A.188 Chain B: E.190, Y.191, S.194, R.195 6 PLIP interactions: 2 interactions with chain A, 4 interactions with chain B Hydrophobic interactions: A:H.153 Salt bridges: A:H.184, B:R.195 Hydrogen bonds: B:E.190, B:R.195, B:R.195 BOG.3: 9 residues within 4Å: Chain A: E.190, Y.191, S.194, R.195 Chain B: H.153, F.180, H.184, M.187, A.188 7 PLIP interactions: 5 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:E.190, A:E.190, A:R.195, A:R.195 Salt bridges: A:R.195, B:H.184 Hydrophobic interactions: B:H.153

2 x FMT: FORMIC ACID(Non-functional Binders)

FMT.2: 5 residues within 4Å: Chain A: F.43, Q.78, R.87, W.94, G.97 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.78, A:R.87, A:R.87 Water bridges: A:W.94 FMT.4: 5 residues within 4Å: Chain B: F.43, Q.78, R.87, W.94, G.97 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:Q.78, B:R.87, B:R.87 Water bridges: B:W.94

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Parsons, J.F. et al., Structure and mechanism of Pseudomonas aeruginosa PhzD, an isochorismatase from the phenazine biosynthetic pathway. Biochemistry (2003)

Release Date

2003-06-17

Peptides

phenazine biosynthesis protein phzD: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

phenazine biosynthesis protein phzD