SMTL ID : 1nfd.3 (2 other biounits)

AN ALPHA-BETA T CELL RECEPTOR (TCR) HETERODIMER IN COMPLEX WITH AN ANTI-TCR FAB FRAGMENT DERIVED FROM A MITOGENIC ANTIBODY

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

hetero-2-2-1-1-mer

Ligands

14 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: T.6, K.19, N.21 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:T.6 Hydrogen bonds: A:N.21, A:N.21 NAG.2: 8 residues within 4Å: Chain A: G.153, N.179, Q.180 Chain C: T.146, V.147, T.148, N.157, T.162 5 PLIP interactions: 2 interactions with chain A, 3 interactions with chain C Hydrophobic interactions: A:Q.180 Hydrogen bonds: A:S.152, C:T.148, C:T.148, C:N.157 NAG.3: 7 residues within 4Å: Chain A: N.193 Chain C: I.4, Q.5, P.6, T.20, C.21, S.22 3 PLIP interactions: 2 interactions with chain C, 1 interactions with chain A Hydrophobic interactions: C:I.4 Hydrogen bonds: C:T.20, A:N.193 NAG.4: 3 residues within 4Å: Chain B: R.18, N.77, S.79 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.18, B:R.18, B:S.79 NAG.5: 3 residues within 4Å: Chain B: D.114, N.117, Y.180 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:D.114 Hydrogen bonds: B:D.114, B:D.114 NAG.6: 2 residues within 4Å: Chain B: N.179, Y.180 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:N.179 NAG.7: 3 residues within 4Å: Chain B: Q.205, Q.207, N.228 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Q.205, B:N.228 NAG.8: 3 residues within 4Å: Chain E: T.6, K.19, N.21 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:T.6 NAG.9: 2 residues within 4Å: Chain E: G.153, N.179 No protein-ligand interaction detected (PLIP) NAG.10: 3 residues within 4Å: Chain E: P.119, N.193, A.194 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:N.193 NAG.11: 4 residues within 4Å: Chain F: R.18, V.20, N.77, S.79 4 PLIP interactions: 4 interactions with chain F Hydrophobic interactions: F:V.20 Hydrogen bonds: F:S.65, F:N.77, F:S.79 NAG.12: 3 residues within 4Å: Chain F: D.114, N.117, Y.180 1 PLIP interactions: 1 interactions with chain F Hydrophobic interactions: F:D.114 NAG.13: 3 residues within 4Å: Chain F: K.176, N.179, Y.180 2 PLIP interactions: 2 interactions with chain F Hydrophobic interactions: F:Y.180 Hydrogen bonds: F:K.176 NAG.14: 3 residues within 4Å: Chain F: R.203, Q.205, N.228 1 PLIP interactions: 1 interactions with chain F Hydrophobic interactions: F:N.228

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, J. et al., Atomic structure of an alphabeta T cell receptor (TCR) heterodimer in complex with an anti-TCR fab fragment derived from a mitogenic antibody. EMBO J. (1998)

Release Date

1998-01-28

Peptides

N15 ALPHA-BETA T-CELL RECEPTOR: AE
N15 ALPHA-BETA T-CELL RECEPTOR: BF
H57 FAB: C
H57 FAB: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E
C

B
B

F
D

C
E

D
F

N15 ALPHA-BETA T-CELL RECEPTOR

N15 ALPHA-BETA T-CELL RECEPTOR

H57 FAB

H57 FAB

Related Entries With Identical Sequence