SMTL ID : 1nff.1

Crystal structure of Rv2002 gene product from Mycobacterium tuberculosis

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-tetramer

Ligands

4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 29 residues within 4Å: Chain A: G.14, R.17, G.18, M.19, D.38, I.39, L.40, L.60, D.61, V.62, N.88, A.89, G.90, I.91, R.107, V.111, I.138, S.139, S.140, Y.153, K.157, P.183, G.184, L.185, V.186, T.188, P.189, M.190, T.191 22 PLIP interactions: 22 interactions with chain A Hydrophobic interactions: A:P.183 Hydrogen bonds: A:G.14, A:R.17, A:M.19, A:I.39, A:D.61, A:D.61, A:V.62, A:N.88, A:N.88, A:G.90, A:Y.153, A:K.157, A:V.186, A:T.188, A:T.188, A:M.190, A:T.191, A:T.191 Water bridges: A:G.20, A:R.107 Salt bridges: A:R.17 NAD.2: 28 residues within 4Å: Chain B: G.14, R.17, G.18, M.19, D.38, I.39, L.40, L.60, D.61, V.62, N.88, A.89, G.90, I.91, V.111, I.138, S.139, S.140, Y.153, K.157, P.183, G.184, L.185, V.186, T.188, P.189, M.190, T.191 19 PLIP interactions: 19 interactions with chain B Hydrophobic interactions: B:P.183 Hydrogen bonds: B:G.14, B:R.17, B:M.19, B:D.61, B:V.62, B:N.88, B:N.88, B:G.90, B:R.107, B:K.157, B:V.186, B:T.188, B:T.188, B:T.191, B:T.191 Water bridges: B:G.20, B:G.20 Salt bridges: B:R.17 NAD.3: 29 residues within 4Å: Chain C: G.14, R.17, G.18, M.19, D.38, I.39, L.40, L.60, D.61, V.62, N.88, A.89, G.90, I.91, R.107, V.111, I.138, S.139, S.140, Y.153, K.157, P.183, G.184, L.185, V.186, T.188, P.189, M.190, T.191 19 PLIP interactions: 19 interactions with chain C Hydrophobic interactions: C:P.183 Hydrogen bonds: C:G.14, C:R.17, C:M.19, C:I.39, C:D.61, C:V.62, C:N.88, C:N.88, C:G.90, C:K.157, C:V.186, C:T.188, C:T.188, C:M.190, C:T.191 Water bridges: C:G.20, C:R.107 Salt bridges: C:R.17 NAD.4: 28 residues within 4Å: Chain D: G.14, R.17, G.18, M.19, D.38, I.39, L.40, L.60, D.61, V.62, N.88, A.89, G.90, I.91, V.111, I.138, S.139, S.140, Y.153, K.157, P.183, G.184, L.185, V.186, T.188, P.189, M.190, T.191 19 PLIP interactions: 19 interactions with chain D Hydrophobic interactions: D:P.183 Hydrogen bonds: D:G.14, D:R.17, D:M.19, D:D.61, D:D.61, D:V.62, D:N.88, D:N.88, D:G.90, D:R.107, D:Y.153, D:K.157, D:V.186, D:T.188, D:T.191 Water bridges: D:G.20, D:G.20 Salt bridges: D:R.17

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, J.K. et al., Directed evolution approach to a structural genomics project: Rv2002 from Mycobacterium tuberculosis. Proc.Natl.Acad.Sci.USA (2003)

Release Date

2002-12-30

Peptides

Putative oxidoreductase Rv2002: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Putative oxidoreductase Rv2002

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