SMTL ID : 1nfg.1

Structure of D-hydantoinase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-tetramer

Ligands

8 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.57, H.59, K.148, D.313 Ligands: ZN.2 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.57, A:H.59, A:D.313 ZN.2: 4 residues within 4Å: Chain A: K.148, H.181, H.237 Ligands: ZN.1 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.181, A:H.237, H2O.3 ZN.3: 5 residues within 4Å: Chain B: H.57, H.59, K.148, D.313 Ligands: ZN.4 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.57, B:H.59, B:D.313 ZN.4: 4 residues within 4Å: Chain B: K.148, H.181, H.237 Ligands: ZN.3 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.181, B:H.237, H2O.9 ZN.5: 5 residues within 4Å: Chain C: H.57, H.59, K.148, D.313 Ligands: ZN.6 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:H.57, C:H.59, C:D.313 ZN.6: 4 residues within 4Å: Chain C: K.148, H.181, H.237 Ligands: ZN.5 3 PLIP interactions: 2 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:H.181, C:H.237, H2O.13 ZN.7: 5 residues within 4Å: Chain D: H.57, H.59, K.148, D.313 Ligands: ZN.8 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:H.57, D:H.59, D:D.313 ZN.8: 4 residues within 4Å: Chain D: K.148, H.181, H.237 Ligands: ZN.7 3 PLIP interactions: 2 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:H.181, D:H.237, H2O.19

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xu, Z. et al., Crystal Structure of D-Hydantoinase from Burkholderia pickettii at a Resolution of 2.7 Angstroms: Insights into the Molecular Basis of Enzyme Thermostability. J.Bacteriol. (2003)

Release Date

2003-07-15

Peptides

D-hydantoinase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

D-hydantoinase