SMTL ID : 1nfp.1

STRUCTURAL REFINEMENT OF THE NON-FLUORESCENT FLAVOPROTEIN FROM PHOTOBACTERIUM LEIOGNATHI AT 1.60 ANGSTROMS RESOLUTION

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-dimer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 1 residues within 4Å: Chain A: H.109 2 PLIP interactions: 2 interactions with chain A Water bridges: A:E.105 Salt bridges: A:H.109 SO4.6: 1 residues within 4Å: Chain B: H.109 2 PLIP interactions: 2 interactions with chain B Water bridges: B:E.105 Salt bridges: B:H.109

4 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)

FMN.2: 12 residues within 4Å: Chain A: T.60, K.61, A.63, P.64, F.65, T.77, S.78, T.81, K.84 Chain B: Y.14, P.21 Ligands: MYR.3 13 PLIP interactions: 12 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:A.63, A:F.65 Hydrogen bonds: A:T.77, A:T.77, A:S.78, A:S.78, A:K.84 Water bridges: A:K.61, A:E.80, A:T.81 Salt bridges: A:K.61 pi-Cation interactions: A:K.84 pi-Stacking: B:Y.14 FMN.4: 9 residues within 4Å: Chain A: M.1, T.2, W.4, L.178, H.179, A.182, N.190, Y.221 Ligands: MYR.5 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:L.178, A:A.182 Hydrogen bonds: A:M.1, A:T.2, A:T.2, A:W.4, A:Y.221 Water bridges: A:Y.6, A:Y.6, A:Q.186 pi-Stacking: A:W.4, A:W.4, A:W.4 FMN.7: 12 residues within 4Å: Chain A: Y.14, P.21 Chain B: T.60, K.61, A.63, P.64, F.65, T.77, S.78, T.81, K.84 Ligands: MYR.8 12 PLIP interactions: 11 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:A.63, B:F.65 Hydrogen bonds: B:T.77, B:T.77, B:S.78, B:S.78, B:T.81, B:K.84 Water bridges: B:K.61 Salt bridges: B:K.61 pi-Cation interactions: B:K.84 pi-Stacking: A:Y.14 FMN.9: 9 residues within 4Å: Chain B: M.1, T.2, W.4, L.178, H.179, A.182, N.190, Y.221 Ligands: MYR.10 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:L.178, B:A.182 Hydrogen bonds: B:M.1, B:T.2, B:T.2, B:W.4 Water bridges: B:Q.186 pi-Stacking: B:W.4, B:W.4, B:W.4

4 x MYR: MYRISTIC ACID(Non-covalent)

MYR.3: 11 residues within 4Å: Chain A: F.65, K.87, Y.88 Chain B: L.11, Y.14, P.21, S.22, A.28, L.29, L.32 Ligands: FMN.2 7 PLIP interactions: 5 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:Y.14, B:A.28, B:L.29, B:L.32, A:F.65 Water bridges: B:S.22 Salt bridges: A:K.87 MYR.5: 12 residues within 4Å: Chain A: W.4, Y.6, L.178, V.181, F.196, F.198, L.210, F.214, R.217, V.218, Y.221 Ligands: FMN.4 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:W.4, A:Y.6, A:L.178, A:V.181, A:F.196, A:F.198, A:L.210, A:F.214, A:F.214, A:F.214, A:Y.221 Water bridges: A:Y.6, A:Y.6 MYR.8: 11 residues within 4Å: Chain A: L.11, Y.14, P.21, S.22, A.28, L.29, L.32 Chain B: F.65, K.87, Y.88 Ligands: FMN.7 8 PLIP interactions: 5 interactions with chain A, 3 interactions with chain B Hydrophobic interactions: A:Y.14, A:A.28, A:L.29, A:L.32, B:F.65 Water bridges: A:S.22 Hydrogen bonds: B:Y.88 Salt bridges: B:K.87 MYR.10: 12 residues within 4Å: Chain B: W.4, Y.6, L.178, V.181, F.196, F.198, L.210, F.214, R.217, V.218, Y.221 Ligands: FMN.9 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:W.4, B:Y.6, B:L.178, B:V.181, B:F.196, B:F.198, B:L.210, B:F.214, B:F.214, B:F.214, B:Y.221 Water bridges: B:Y.6

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Moore, S.A. et al., Structural refinement of the non-fluorescent flavoprotein from Photobacterium leiognathi at 1.60 A resolution. J.Mol.Biol. (1995)

Release Date

1995-06-03

Peptides

LUXF GENE PRODUCT: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

LUXF GENE PRODUCT