SMTL ID : 1nfq.1

Rv2002 gene product from Mycobacterium tuberculosis

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-tetramer

Ligands

4 x NAI: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE(Non-covalent)

NAI.1: 30 residues within 4Å: Chain A: G.14, R.17, G.18, M.19, D.38, I.39, L.40, L.60, D.61, V.62, N.88, A.89, G.90, I.91, R.107, V.111, I.138, S.139, S.140, Y.153, K.157, P.183, G.184, L.185, V.186, T.188, P.189, M.190, T.191 Ligands: AOI.2 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:P.183 Hydrogen bonds: A:R.17, A:M.19, A:D.61, A:V.62, A:N.88, A:N.88, A:G.90, A:R.107, A:K.157, A:V.186, A:T.188, A:M.190, A:T.191, A:T.191 Water bridges: A:R.17, A:G.20 Salt bridges: A:R.17 NAI.3: 30 residues within 4Å: Chain B: G.14, R.17, G.18, M.19, D.38, I.39, L.40, L.60, D.61, V.62, N.88, A.89, G.90, I.91, R.107, V.111, I.138, S.139, S.140, Y.153, K.157, P.183, G.184, L.185, V.186, T.188, P.189, M.190, T.191 Ligands: AOI.4 18 PLIP interactions: 18 interactions with chain B Hydrophobic interactions: B:P.183 Hydrogen bonds: B:R.17, B:M.19, B:D.61, B:V.62, B:N.88, B:N.88, B:G.90, B:R.107, B:K.157, B:V.186, B:T.188, B:T.188, B:M.190, B:T.191, B:T.191 Water bridges: B:G.20 Salt bridges: B:R.17 NAI.5: 29 residues within 4Å: Chain C: G.14, R.17, G.18, M.19, D.38, I.39, L.40, L.60, D.61, V.62, N.88, A.89, G.90, I.91, V.111, I.138, S.139, S.140, Y.153, K.157, P.183, G.184, L.185, V.186, T.188, P.189, M.190, T.191 Ligands: AOI.6 19 PLIP interactions: 19 interactions with chain C Hydrophobic interactions: C:P.183 Hydrogen bonds: C:R.17, C:R.17, C:M.19, C:D.61, C:V.62, C:N.88, C:N.88, C:G.90, C:Y.153, C:K.157, C:V.186, C:T.188, C:M.190, C:T.191 Water bridges: C:G.20, C:G.20, C:R.107 Salt bridges: C:R.17 NAI.7: 30 residues within 4Å: Chain D: G.14, R.17, G.18, M.19, D.38, I.39, L.40, L.60, D.61, V.62, N.88, A.89, G.90, I.91, R.107, V.111, I.138, S.139, S.140, Y.153, K.157, P.183, G.184, L.185, V.186, T.188, P.189, M.190, T.191 Ligands: AOI.8 18 PLIP interactions: 18 interactions with chain D Hydrophobic interactions: D:P.183 Hydrogen bonds: D:G.14, D:R.17, D:M.19, D:D.61, D:V.62, D:N.88, D:N.88, D:G.90, D:Y.153, D:K.157, D:V.186, D:T.188, D:T.188, D:T.191 Water bridges: D:G.20, D:R.107 Salt bridges: D:R.17

4 x AOI: Androsterone(Non-covalent)

AOI.2: 12 residues within 4Å: Chain A: L.92, I.94, E.142, T.147, V.148, C.150, Y.153, M.190, V.194, I.198, F.199 Ligands: NAI.1 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:L.92, A:I.94, A:T.147, A:Y.153, A:V.194, A:I.198, A:F.199, A:F.199 Hydrogen bonds: A:Y.153 Water bridges: A:E.142, A:G.184 AOI.4: 12 residues within 4Å: Chain B: L.92, I.94, E.142, V.148, C.150, Y.153, L.185, M.190, V.194, I.198, F.199 Ligands: NAI.3 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:L.92, B:L.92, B:I.94, B:Y.153, B:L.185, B:V.194, B:I.198, B:I.198, B:F.199, B:F.199 Hydrogen bonds: B:Y.153 Water bridges: B:E.142, B:G.184 AOI.6: 12 residues within 4Å: Chain C: L.92, I.94, E.142, V.148, C.150, Y.153, L.185, M.190, V.194, I.198, F.199 Ligands: NAI.5 10 PLIP interactions: 10 interactions with chain C Hydrophobic interactions: C:L.92, C:I.94, C:L.185, C:V.194, C:I.198, C:I.198, C:F.199, C:F.199 Water bridges: C:E.142, C:G.184 AOI.8: 12 residues within 4Å: Chain D: L.92, I.94, E.142, V.148, C.150, Y.153, L.185, M.190, V.194, I.198, F.199 Ligands: NAI.7 11 PLIP interactions: 11 interactions with chain D Hydrophobic interactions: D:L.92, D:L.92, D:I.94, D:L.185, D:V.194, D:I.198, D:I.198, D:F.199, D:F.199 Water bridges: D:E.142, D:G.184

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, J.K. et al., Directed evolution approach to a structural genomics project: Rv2002 from Mycobacterium tuberculosis. Proc.Natl.Acad.Sci.USA (2003)

Release Date

2002-12-30

Peptides

Putative oxidoreductase Rv2002: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Putative oxidoreductase Rv2002

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