SMTL ID : 1nh8.2 (1 other biounit)

ATP PHOSPHORIBOSYLTRANSFERASE (ATP-PRTASE) FROM MYCOBACTERIUM TUBERCULOSIS IN COMPLEX WITH AMP AND HISTIDINE

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-hexamer

Ligands

18 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: C.195, D.196 Ligand excluded by PLIP SO4.2: 5 residues within 4Å: Chain A: A.128, G.129, M.130, R.131, D.170 Ligand excluded by PLIP SO4.3: 3 residues within 4Å: Chain A: R.141, R.155 Chain E: R.155 Ligand excluded by PLIP SO4.6: 2 residues within 4Å: Chain B: C.195, D.196 Ligand excluded by PLIP SO4.7: 5 residues within 4Å: Chain B: A.128, G.129, M.130, R.131, D.170 Ligand excluded by PLIP SO4.8: 3 residues within 4Å: Chain B: R.141, R.155 Chain D: R.155 Ligand excluded by PLIP SO4.11: 2 residues within 4Å: Chain C: C.195, D.196 Ligand excluded by PLIP SO4.12: 5 residues within 4Å: Chain C: A.128, G.129, M.130, R.131, D.170 Ligand excluded by PLIP SO4.13: 3 residues within 4Å: Chain C: R.141, R.155 Chain F: R.155 Ligand excluded by PLIP SO4.16: 2 residues within 4Å: Chain D: C.195, D.196 Ligand excluded by PLIP SO4.17: 5 residues within 4Å: Chain D: A.128, G.129, M.130, R.131, D.170 Ligand excluded by PLIP SO4.18: 3 residues within 4Å: Chain B: R.155 Chain D: R.141, R.155 Ligand excluded by PLIP SO4.21: 2 residues within 4Å: Chain E: C.195, D.196 Ligand excluded by PLIP SO4.22: 5 residues within 4Å: Chain E: A.128, G.129, M.130, R.131, D.170 Ligand excluded by PLIP SO4.23: 3 residues within 4Å: Chain A: R.155 Chain E: R.141, R.155 Ligand excluded by PLIP SO4.26: 2 residues within 4Å: Chain F: C.195, D.196 Ligand excluded by PLIP SO4.27: 5 residues within 4Å: Chain F: A.128, G.129, M.130, R.131, D.170 Ligand excluded by PLIP SO4.28: 3 residues within 4Å: Chain C: R.155 Chain F: R.141, R.155 Ligand excluded by PLIP

6 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)

AMP.4: 11 residues within 4Å: Chain A: A.31, Y.136, V.175, V.176, G.177, S.178, G.179, R.180, T.181 Chain C: D.50, D.53 15 PLIP interactions: 11 interactions with chain A, 4 interactions with chain C Hydrogen bonds: A:Y.136, A:Y.136, A:G.177, A:S.178, A:G.179, A:R.180, A:T.181, A:T.181, A:T.181, C:D.50, C:D.50, C:D.53, C:D.53 Water bridges: A:S.110, A:L.182 AMP.9: 11 residues within 4Å: Chain A: D.50, D.53 Chain B: A.31, Y.136, V.175, V.176, G.177, S.178, G.179, R.180, T.181 15 PLIP interactions: 4 interactions with chain A, 11 interactions with chain B Hydrogen bonds: A:D.50, A:D.50, A:D.53, A:D.53, B:Y.136, B:Y.136, B:G.177, B:S.178, B:G.179, B:R.180, B:T.181, B:T.181, B:T.181 Water bridges: B:S.110, B:L.182 AMP.14: 11 residues within 4Å: Chain B: D.50, D.53 Chain C: A.31, Y.136, V.175, V.176, G.177, S.178, G.179, R.180, T.181 15 PLIP interactions: 11 interactions with chain C, 4 interactions with chain B Hydrogen bonds: C:Y.136, C:Y.136, C:G.177, C:S.178, C:G.179, C:R.180, C:T.181, C:T.181, C:T.181, B:D.50, B:D.50, B:D.53, B:D.53 Water bridges: C:S.110, C:L.182 AMP.19: 11 residues within 4Å: Chain D: A.31, Y.136, V.175, V.176, G.177, S.178, G.179, R.180, T.181 Chain F: D.50, D.53 13 PLIP interactions: 11 interactions with chain D, 2 interactions with chain F Hydrogen bonds: D:Y.136, D:G.177, D:S.178, D:G.179, D:R.180, D:T.181, D:T.181, D:T.181, D:T.181, F:D.50, F:D.53 Water bridges: D:S.110, D:L.182 AMP.24: 11 residues within 4Å: Chain D: D.50, D.53 Chain E: A.31, Y.136, V.175, V.176, G.177, S.178, G.179, R.180, T.181 13 PLIP interactions: 11 interactions with chain E, 2 interactions with chain D Hydrogen bonds: E:Y.136, E:G.177, E:S.178, E:G.179, E:R.180, E:T.181, E:T.181, E:T.181, E:T.181, D:D.50, D:D.53 Water bridges: E:S.110, E:L.182 AMP.29: 11 residues within 4Å: Chain E: D.50, D.53 Chain F: A.31, Y.136, V.175, V.176, G.177, S.178, G.179, R.180, T.181 13 PLIP interactions: 11 interactions with chain F, 2 interactions with chain E Hydrogen bonds: F:Y.136, F:G.177, F:S.178, F:G.179, F:R.180, F:T.181, F:T.181, F:T.181, F:T.181, E:D.50, E:D.53 Water bridges: F:S.110, F:L.182

6 x HIS: HISTIDINE(Non-covalent)

HIS.5: 15 residues within 4Å: Chain A: D.236, Y.237, D.238, L.262, A.293, L.295 Chain C: M.234, G.253, L.254, S.256, P.257, T.258, R.271, A.272, L.273 7 PLIP interactions: 4 interactions with chain C, 3 interactions with chain A Hydrogen bonds: C:L.254, C:T.258, C:T.258, C:L.273, A:D.238 Water bridges: A:D.236, A:D.236 HIS.10: 15 residues within 4Å: Chain A: M.234, G.253, L.254, S.256, P.257, T.258, R.271, A.272, L.273 Chain B: D.236, Y.237, D.238, L.262, A.293, L.295 7 PLIP interactions: 4 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:L.254, A:T.258, A:T.258, A:L.273, B:D.238 Water bridges: B:D.236, B:D.236 HIS.15: 15 residues within 4Å: Chain B: M.234, G.253, L.254, S.256, P.257, T.258, R.271, A.272, L.273 Chain C: D.236, Y.237, D.238, L.262, A.293, L.295 7 PLIP interactions: 4 interactions with chain B, 3 interactions with chain C Hydrogen bonds: B:L.254, B:T.258, B:T.258, B:L.273, C:D.238 Water bridges: C:D.236, C:D.236 HIS.20: 15 residues within 4Å: Chain D: D.236, Y.237, D.238, L.262, A.293, L.295 Chain F: M.234, G.253, L.254, S.256, P.257, T.258, R.271, A.272, L.273 6 PLIP interactions: 4 interactions with chain F, 2 interactions with chain D Hydrogen bonds: F:L.254, F:T.258, F:T.258, F:L.273, D:D.238 Water bridges: D:Y.237 HIS.25: 15 residues within 4Å: Chain D: M.234, G.253, L.254, S.256, P.257, T.258, R.271, A.272, L.273 Chain E: D.236, Y.237, D.238, L.262, A.293, L.295 6 PLIP interactions: 4 interactions with chain D, 2 interactions with chain E Hydrogen bonds: D:L.254, D:T.258, D:T.258, D:L.273, E:D.238 Water bridges: E:Y.237 HIS.30: 15 residues within 4Å: Chain E: M.234, G.253, L.254, S.256, P.257, T.258, R.271, A.272, L.273 Chain F: D.236, Y.237, D.238, L.262, A.293, L.295 6 PLIP interactions: 2 interactions with chain F, 4 interactions with chain E Hydrogen bonds: F:D.238, E:L.254, E:T.258, E:T.258, E:L.273 Water bridges: F:Y.237

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cho, Y. et al., Crystal structure of ATP phosphoribosyltransferase from Mycobacterium tuberculosis. J.Biol.Chem. (2003)

Release Date

2003-02-11

Peptides

ATP Phosphoribosyltransferase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

ATP Phosphoribosyltransferase

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