SMTL ID : 1nhj.1

Crystal structure of N-terminal 40KD MutL/A100P mutant protein complex with ADPnP and one sodium

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

2 x NA: SODIUM ION(Non-functional Binders)

NA.1: 7 residues within 4Å: Chain A: L.72, A.73, A.75, A.78, G.98, P.102 Ligands: ANP.3 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.98 NA.4: 7 residues within 4Å: Chain B: L.72, A.73, A.75, A.78, G.98, P.102 Ligands: ANP.6 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:A.78

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain A: N.35, K.81, A.100 Ligands: ANP.3 No protein-ligand interaction detected (PLIP) MG.5: 4 residues within 4Å: Chain B: N.35, K.81, A.100 Ligands: ANP.6 No protein-ligand interaction detected (PLIP)

2 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.3: 25 residues within 4Å: Chain A: E.31, N.35, S.36, A.39, D.60, G.64, I.65, A.73, A.78, T.79, S.80, K.81, G.95, F.96, R.97, G.98, E.99, A.100, L.101, P.102, T.145, K.309 Chain B: I.5 Ligands: NA.1, MG.2 24 PLIP interactions: 24 interactions with chain A Hydrogen bonds: A:N.35, A:D.60, A:T.79, A:T.79, A:S.80, A:S.80, A:S.80, A:K.81, A:F.96, A:R.97, A:G.98, A:E.99, A:A.100, A:L.101, A:T.145, A:K.309, A:K.309 Water bridges: A:D.60, A:D.60, A:D.60, A:G.62, A:G.64, A:K.81, A:R.97 ANP.6: 25 residues within 4Å: Chain A: I.5 Chain B: E.31, N.35, S.36, A.39, D.60, G.64, I.65, A.73, A.78, T.79, S.80, K.81, G.95, F.96, R.97, G.98, E.99, A.100, L.101, P.102, T.145, K.309 Ligands: NA.4, MG.5 24 PLIP interactions: 24 interactions with chain B Hydrogen bonds: B:N.35, B:D.60, B:T.79, B:T.79, B:S.80, B:S.80, B:S.80, B:K.81, B:F.96, B:R.97, B:G.98, B:E.99, B:A.100, B:L.101, B:T.145, B:K.309, B:K.309 Water bridges: B:D.60, B:D.60, B:D.60, B:G.62, B:G.64, B:K.81, B:R.97

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hu, X. et al., Monovalent cation dependence and preference of GHKL ATPases and kinases. FEBS Lett. (2003)

Release Date

2003-06-10

Peptides

DNA mismatch repair protein mutL: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

DNA mismatch repair protein mutL