SMTL ID : 1ni1.1

Imidazole and cyanophenyl farnesyl transferase inhibitors

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain B: D.276, C.278, Y.340, H.341 Ligands: 2C5.3 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:D.276, B:D.276, B:C.278, B:H.341

1 x HFP: ALPHA-HYDROXYFARNESYLPHOSPHONIC ACID(Non-covalent)

HFP.2: 16 residues within 4Å: Chain A: K.110, Y.112, Y.146 Chain B: W.81, R.181, Y.184, H.227, G.229, Y.230, C.233, R.270, K.273, Y.279, W.282, Y.340 Ligands: 2C5.3 12 PLIP interactions: 10 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:W.81, B:R.181, B:Y.184, B:Y.230, B:W.282, B:W.282, A:Y.146 Hydrogen bonds: B:R.270, B:K.273, B:K.273, B:Y.279, A:K.110

1 x 2C5: 2-CHLORO-5-(3-CHLORO-PHENYL)-6-[(4-CYANO-PHENYL)-(3-METHYL-3H-IMIDAZOL-4-YL)- METHOXYMETHYL]-NICOTINONITRILE(Non-covalent)

2C5.3: 14 residues within 4Å: Chain A: Y.112 Chain B: Y.72, L.75, W.81, W.85, R.181, D.276, C.278, D.338, F.339, Y.340, H.341 Ligands: ZN.1, HFP.2 11 PLIP interactions: 9 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:L.75, B:L.75, B:W.85, B:Y.340, B:Y.340, A:Y.112 Hydrogen bonds: B:R.181, B:D.338, B:F.339, B:Y.340, A:Y.112

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tong, Y. et al., Discovery of potent imidazole and cyanophenyl containing farnesyltransferase inhibitors with improved oral bioavailability. Bioorg.Med.Chem.Lett. (2003)

Release Date

2004-04-06

Peptides

Protein farnesyltransferase alpha subunit: A
Protein farnesyltransferase beta subunit: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Protein farnesyltransferase alpha subunit

Protein farnesyltransferase beta subunit

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