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SMTL ID : 1njj.2
(1 other biounit)
Crystal structure determination of T. brucei ornithine decarboxylase bound to D-ornithine and to G418
Coordinates
PDB Format
Method
X-RAY DIFFRACTION 2.45 Å
Oligo State
homo-dimer
Ligands
1 x
GET
:
GENETICIN
(Non-covalent)
GET.1:
10 residues within 4Å:
Chain A:
R.22
,
L.25
,
D.243
,
L.339
,
P.340
,
Q.341
,
E.343
,
L.382
,
E.384
,
D.385
8
PLIP interactions
:
8 interactions with chain A
Hydrophobic interactions:
A:L.339
,
A:L.382
Hydrogen bonds:
A:R.22
,
A:R.22
,
A:D.243
,
A:D.243
,
A:E.384
,
A:E.384
2 x
ORX
:
N~2~-({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)-D-ORNITHINE
(Non-covalent)
ORX.2:
19 residues within 4Å:
Chain A:
A.67
,
K.69
,
D.88
,
R.154
,
H.197
,
G.199
,
G.236
,
G.237
,
E.274
,
P.275
,
G.276
,
R.277
,
Y.331
,
D.332
,
Y.389
Chain B:
Y.323
,
C.360
,
D.361
,
G.362
19
PLIP interactions
:
2 interactions with chain B
,
17 interactions with chain A
Hydrogen bonds:
B:C.360
,
B:G.362
,
A:G.237
,
A:E.274
,
A:E.274
,
A:G.276
,
A:R.277
,
A:D.332
Hydrophobic interactions:
A:K.69
Water bridges:
A:K.69
,
A:R.154
,
A:S.200
,
A:F.238
,
A:F.238
Salt bridges:
A:H.197
,
A:H.197
,
A:R.277
pi-Cation interactions:
A:K.69
,
A:H.197
ORX.3:
18 residues within 4Å:
Chain A:
Y.323
,
C.360
,
D.361
,
G.362
Chain B:
A.67
,
K.69
,
D.88
,
H.197
,
G.199
,
G.236
,
G.237
,
E.274
,
P.275
,
G.276
,
R.277
,
Y.331
,
D.332
,
Y.389
17
PLIP interactions
:
13 interactions with chain B
,
4 interactions with chain A
Hydrogen bonds:
B:G.237
,
B:F.238
,
B:E.274
,
B:G.276
,
B:R.277
,
B:D.332
,
B:D.332
,
A:Y.323
,
A:C.360
,
A:D.361
,
A:G.362
Water bridges:
B:R.154
,
B:S.200
,
B:R.277
Salt bridges:
B:R.277
pi-Cation interactions:
B:K.69
,
B:H.197
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Jackson, L.K. et al., X-ray Structure Determination of Trypanosoma brucei Ornithine Decarboxylase Bound to D-Ornithine and to G418: INSIGHTS INTO SUBSTRATE BINDING AND ODC CONFORMATIONAL FLEXIBILITY. J.Biol.Chem. (2003)
Release Date
2003-08-26
Peptides
ornithine decarboxylase:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
C
B
D
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ornithine decarboxylase
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