SMTL ID : 1njw.1

GUANINE-THYMINE MISMATCH AT THE POLYMERASE ACTIVE SITE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

2 x GLC- FRU: beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose(Non-covalent)

GLC-FRU.1: 10 residues within 4Å: Chain C: E.29, N.30, Y.31, D.76, R.79, L.99, D.112, I.309, N.311, T.323 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:R.79, C:D.112, C:N.311, C:N.311, C:A.313, C:R.79, C:E.324, C:E.324 Water bridges: C:D.76, C:R.79, C:Q.312, C:E.29 GLC-FRU.2: 9 residues within 4Å: Chain B: A.10, T.11 Chain C: E.219, Y.223, F.230, N.231, I.232, N.233, Y.281 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:N.231, C:E.219, C:Y.223, C:I.232, C:N.233, C:N.233 Water bridges: C:N.231

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 4 residues within 4Å: Chain C: K.2, M.3, A.4, R.47 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:A.4 Salt bridges: C:R.47 SO4.4: 3 residues within 4Å: Chain C: H.386, R.406, K.410 2 PLIP interactions: 2 interactions with chain C Salt bridges: C:R.406, C:K.410 SO4.5: 1 residues within 4Å: Chain C: R.523 3 PLIP interactions: 3 interactions with chain C Water bridges: C:K.520, C:R.523 Salt bridges: C:R.523

1 x MG: MAGNESIUM ION(Non-covalent)

MG.6: 3 residues within 4Å: Chain C: D.357, Y.358, D.534 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:D.357, C:Y.358, C:D.534

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Johnson, S.J. et al., Structures of mismatch replication errors observed in a DNA polymerase. Cell(Cambridge,Mass.) (2004)

Release Date

2004-03-30

Peptides

DNA POLYMERASE I: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

C
A

DNA POLYMERASE I

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