SMTL ID : 1nkz.1 (1 other biounit)

Crystal structure of LH2 B800-850 from Rps. acidophila at 2.0 Angstrom resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

hetero-9-9-mer

Ligands

18 x RG1: Rhodopin b-D-glucoside(Non-covalent)

RG1.1: 15 residues within 4Å: Chain A: W.40, A.43, Y.44, G.47, V.49 Chain B: V.28, A.29, L.32, A.33, A.36, T.37, P.38 Chain R: H.41 Ligands: BCL.3, BCL.72 Ligand excluded by PLIP RG1.5: 23 residues within 4Å: Chain A: L.20, V.23, I.26, V.30 Chain B: E.10, L.11, Y.14, V.15, G.18, T.19 Chain C: A.27, I.28, H.31, W.45 Chain Q: Q.3, K.5, I.6 Chain R: A.5 Ligands: BCL.4, BCL.6, BCL.11, BCL.69, BCL.72 Ligand excluded by PLIP RG1.7: 23 residues within 4Å: Chain C: Q.3, K.5, I.6 Chain D: A.5 Chain E: L.20, V.23, I.26, V.30 Chain F: E.10, L.11, Y.14, V.15, G.18, T.19 Chain G: A.27, I.28, H.31, W.45 Ligands: BCL.12, BCL.15, BCL.21, BCL.24, BCL.27 Ligand excluded by PLIP RG1.8: 15 residues within 4Å: Chain B: H.41 Chain C: W.40, A.43, Y.44, G.47, V.49 Chain D: V.28, A.29, L.32, A.33, A.36, T.37, P.38 Ligands: BCL.6, BCL.11 Ligand excluded by PLIP RG1.14: 22 residues within 4Å: Chain A: Q.3, K.5, I.6 Chain B: A.5 Chain C: L.20, V.23, I.26, V.30 Chain D: E.10, L.11, Y.14, G.18, T.19 Chain E: A.27, I.28, H.31, W.45 Ligands: BCL.4, BCL.6, BCL.12, BCL.15, BCL.20 Ligand excluded by PLIP RG1.16: 14 residues within 4Å: Chain D: H.41 Chain E: W.40, A.43, Y.44, V.49 Chain F: V.28, A.29, L.32, A.33, A.36, T.37, P.38 Ligands: BCL.15, BCL.20 Ligand excluded by PLIP RG1.25: 15 residues within 4Å: Chain F: H.41 Chain G: W.40, A.43, Y.44, G.47, V.49 Chain H: V.28, A.29, L.32, A.33, A.36, T.37, P.38 Ligands: BCL.24, BCL.27 Ligand excluded by PLIP RG1.29: 23 residues within 4Å: Chain E: Q.3, K.5, I.6 Chain F: A.5 Chain G: L.20, V.23, I.26, V.30 Chain H: E.10, L.11, Y.14, V.15, G.18, T.19 Chain I: A.27, I.28, H.31, W.45 Ligands: BCL.21, BCL.24, BCL.28, BCL.30, BCL.35 Ligand excluded by PLIP RG1.31: 23 residues within 4Å: Chain I: Q.3, K.5, I.6 Chain J: A.5 Chain K: L.20, V.23, I.26, V.30 Chain L: E.10, L.11, Y.14, V.15, G.18, T.19 Chain M: A.27, I.28, H.31, W.45 Ligands: BCL.36, BCL.39, BCL.45, BCL.48, BCL.51 Ligand excluded by PLIP RG1.32: 15 residues within 4Å: Chain H: H.41 Chain I: W.40, A.43, Y.44, G.47, V.49 Chain J: V.28, A.29, L.32, A.33, A.36, T.37, P.38 Ligands: BCL.30, BCL.35 Ligand excluded by PLIP RG1.38: 22 residues within 4Å: Chain G: Q.3, K.5, I.6 Chain H: A.5 Chain I: L.20, V.23, I.26, V.30 Chain J: E.10, L.11, Y.14, G.18, T.19 Chain K: A.27, I.28, H.31, W.45 Ligands: BCL.28, BCL.30, BCL.36, BCL.39, BCL.44 Ligand excluded by PLIP RG1.40: 14 residues within 4Å: Chain J: H.41 Chain K: W.40, A.43, Y.44, V.49 Chain L: V.28, A.29, L.32, A.33, A.36, T.37, P.38 Ligands: BCL.39, BCL.44 Ligand excluded by PLIP RG1.49: 15 residues within 4Å: Chain L: H.41 Chain M: W.40, A.43, Y.44, G.47, V.49 Chain N: V.28, A.29, L.32, A.33, A.36, T.37, P.38 Ligands: BCL.48, BCL.51 Ligand excluded by PLIP RG1.53: 23 residues within 4Å: Chain K: Q.3, K.5, I.6 Chain L: A.5 Chain M: L.20, V.23, I.26, V.30 Chain N: E.10, L.11, Y.14, V.15, G.18, T.19 Chain O: A.27, I.28, H.31, W.45 Ligands: BCL.45, BCL.48, BCL.52, BCL.54, BCL.59 Ligand excluded by PLIP RG1.55: 23 residues within 4Å: Chain A: A.27, I.28, H.31, W.45 Chain O: Q.3, K.5, I.6 Chain P: A.5 Chain Q: L.20, V.23, I.26, V.30 Chain R: E.10, L.11, Y.14, V.15, G.18, T.19 Ligands: BCL.3, BCL.60, BCL.63, BCL.69, BCL.72 Ligand excluded by PLIP RG1.56: 15 residues within 4Å: Chain N: H.41 Chain O: W.40, A.43, Y.44, G.47, V.49 Chain P: V.28, A.29, L.32, A.33, A.36, T.37, P.38 Ligands: BCL.54, BCL.59 Ligand excluded by PLIP RG1.62: 22 residues within 4Å: Chain M: Q.3, K.5, I.6 Chain N: A.5 Chain O: L.20, V.23, I.26, V.30 Chain P: E.10, L.11, Y.14, G.18, T.19 Chain Q: A.27, I.28, H.31, W.45 Ligands: BCL.52, BCL.54, BCL.60, BCL.63, BCL.68 Ligand excluded by PLIP RG1.64: 14 residues within 4Å: Chain P: H.41 Chain Q: W.40, A.43, Y.44, V.49 Chain R: V.28, A.29, L.32, A.33, A.36, T.37, P.38 Ligands: BCL.63, BCL.68 Ligand excluded by PLIP

18 x BOG: octyl beta-D-glucopyranoside(Non-covalent)

BOG.2: 6 residues within 4Å: Chain A: A.33, H.37 Chain C: L.32, L.35, S.36 Ligands: BOG.10 Ligand excluded by PLIP BOG.9: 6 residues within 4Å: Chain C: I.14, A.18, S.22, V.25 Ligands: BEN.13, BEN.22 Ligand excluded by PLIP BOG.10: 7 residues within 4Å: Chain C: S.36, H.37 Chain E: I.28, L.32, L.35, S.36 Ligands: BOG.2 Ligand excluded by PLIP BOG.17: 8 residues within 4Å: Chain E: I.14, A.18, G.21, S.22, V.25 Ligands: BOG.18, BEN.22, BEN.23 Ligand excluded by PLIP BOG.18: 7 residues within 4Å: Chain G: I.14, A.18, S.22, V.25 Ligands: BOG.17, BEN.23, BEN.37 Ligand excluded by PLIP BOG.19: 6 residues within 4Å: Chain E: S.36, H.37 Chain G: I.28, L.32, L.35, S.36 Ligand excluded by PLIP BOG.26: 6 residues within 4Å: Chain G: A.33, H.37 Chain I: L.32, L.35, S.36 Ligands: BOG.34 Ligand excluded by PLIP BOG.33: 6 residues within 4Å: Chain I: I.14, A.18, S.22, V.25 Ligands: BEN.37, BEN.46 Ligand excluded by PLIP BOG.34: 7 residues within 4Å: Chain I: S.36, H.37 Chain K: I.28, L.32, L.35, S.36 Ligands: BOG.26 Ligand excluded by PLIP BOG.41: 8 residues within 4Å: Chain K: I.14, A.18, G.21, S.22, V.25 Ligands: BOG.42, BEN.46, BEN.47 Ligand excluded by PLIP BOG.42: 7 residues within 4Å: Chain M: I.14, A.18, S.22, V.25 Ligands: BOG.41, BEN.47, BEN.61 Ligand excluded by PLIP BOG.43: 6 residues within 4Å: Chain K: S.36, H.37 Chain M: I.28, L.32, L.35, S.36 Ligand excluded by PLIP BOG.50: 6 residues within 4Å: Chain M: A.33, H.37 Chain O: L.32, L.35, S.36 Ligands: BOG.58 Ligand excluded by PLIP BOG.57: 6 residues within 4Å: Chain O: I.14, A.18, S.22, V.25 Ligands: BEN.61, BEN.70 Ligand excluded by PLIP BOG.58: 7 residues within 4Å: Chain O: S.36, H.37 Chain Q: I.28, L.32, L.35, S.36 Ligands: BOG.50 Ligand excluded by PLIP BOG.65: 8 residues within 4Å: Chain Q: I.14, A.18, G.21, S.22, V.25 Ligands: BOG.66, BEN.70, BEN.71 Ligand excluded by PLIP BOG.66: 7 residues within 4Å: Chain A: I.14, A.18, S.22, V.25 Ligands: BEN.13, BOG.65, BEN.71 Ligand excluded by PLIP BOG.67: 6 residues within 4Å: Chain A: I.28, L.32, L.35, S.36 Chain Q: S.36, H.37 Ligand excluded by PLIP

27 x BCL: BACTERIOCHLOROPHYLL A(Non-covalent)

BCL.3: 25 residues within 4Å: Chain A: P.17, L.20, T.24, A.27, H.31, W.40, F.41, Y.44, W.45 Chain B: F.22, L.25, A.26, A.29, H.30 Chain Q: I.6, G.15, A.18, L.19, S.22 Ligands: RG1.1, BCL.6, RG1.55, BCL.69, BEN.71, BCL.72 13 PLIP interactions: 2 interactions with chain B, 8 interactions with chain A, 3 interactions with chain Q, Hydrophobic interactions: B:A.29, A:P.17, A:L.20, A:W.40, A:F.41, A:F.41, A:Y.44, A:W.45, Q:I.6, Q:A.18, Q:L.19 Hydrogen bonds: B:H.30 Metal complexes: A:H.31 BCL.4: 18 residues within 4Å: Chain A: M.1, N.2, Q.3 Chain B: V.15, I.16, T.19, R.20, L.23, A.26, L.27, H.30, W.39 Chain C: L.20 Chain D: G.18 Ligands: RG1.5, BCL.6, BCL.11, RG1.14 7 PLIP interactions: 7 interactions with chain B, Hydrophobic interactions: B:V.15, B:R.20, B:L.23, B:A.26, B:L.27, B:W.39 Hydrogen bonds: B:R.20 BCL.6: 25 residues within 4Å: Chain A: V.23, I.26, A.27, V.30, H.31, I.34, W.40 Chain B: T.19, F.22, L.23, A.26, H.30, A.33, T.37, W.39 Chain C: Y.44, W.45 Chain D: V.21, F.22 Ligands: BCL.3, BCL.4, RG1.5, RG1.8, BCL.11, RG1.14 13 PLIP interactions: 9 interactions with chain B, 2 interactions with chain A, 2 interactions with chain D, Hydrophobic interactions: B:T.19, B:F.22, B:L.23, B:A.33, B:T.37, B:W.39, B:W.39, B:W.39, A:V.30, A:W.40, D:V.21, D:F.22 Metal complexes: B:H.30 BCL.11: 24 residues within 4Å: Chain A: I.6, G.15, L.19, S.22 Chain C: P.17, L.20, T.24, A.27, H.31, W.40, F.41, Y.44, W.45 Chain D: F.22, L.25, A.26, A.29, H.30 Ligands: BCL.4, RG1.5, BCL.6, RG1.8, BEN.13, BCL.15 10 PLIP interactions: 7 interactions with chain C, 2 interactions with chain A, 1 interactions with chain D, Hydrophobic interactions: C:L.20, C:W.40, C:F.41, C:F.41, C:Y.44, C:W.45, A:I.6, A:L.19, D:A.29 Metal complexes: C:H.31 BCL.12: 17 residues within 4Å: Chain C: M.1, N.2, Q.3 Chain D: V.15, I.16, T.19, R.20, L.23, A.26, H.30, W.39 Chain E: L.20 Chain F: G.18 Ligands: RG1.7, RG1.14, BCL.15, BCL.20 6 PLIP interactions: 6 interactions with chain D, Hydrophobic interactions: D:V.15, D:R.20, D:L.23, D:A.26, D:W.39 Hydrogen bonds: D:R.20 BCL.15: 23 residues within 4Å: Chain C: V.23, I.26, A.27, V.30, H.31, I.34, W.40 Chain D: T.19, F.22, L.23, A.26, H.30, A.33, T.37, W.39 Chain E: Y.44, W.45 Ligands: RG1.7, BCL.11, BCL.12, RG1.14, RG1.16, BCL.20 9 PLIP interactions: 2 interactions with chain C, 7 interactions with chain D, Hydrophobic interactions: C:V.30, C:W.40, D:T.19, D:F.22, D:L.23, D:A.33, D:T.37, D:W.39 Metal complexes: D:H.30 BCL.20: 25 residues within 4Å: Chain C: I.6, G.15, A.18, L.19, S.22 Chain E: P.17, L.20, T.24, A.27, H.31, W.40, F.41, Y.44, W.45 Chain F: F.22, L.25, A.26, A.29, H.30 Ligands: BCL.12, RG1.14, BCL.15, RG1.16, BEN.22, BCL.24 12 PLIP interactions: 3 interactions with chain C, 8 interactions with chain E, 1 interactions with chain F, Hydrophobic interactions: C:I.6, C:A.18, C:L.19, E:P.17, E:L.20, E:W.40, E:F.41, E:F.41, E:Y.44, E:W.45, F:A.29 Metal complexes: E:H.31 BCL.21: 19 residues within 4Å: Chain E: M.1, N.2, Q.3 Chain F: V.15, I.16, T.19, R.20, L.23, A.26, L.27, H.30, W.39 Chain G: L.20 Chain H: G.18, V.21 Ligands: RG1.7, BCL.24, BCL.27, RG1.29 8 PLIP interactions: 7 interactions with chain F, 1 interactions with chain H, Hydrophobic interactions: F:V.15, F:R.20, F:L.23, F:A.26, F:L.27, F:W.39, H:V.21 Hydrogen bonds: F:R.20 BCL.24: 23 residues within 4Å: Chain E: V.23, I.26, A.27, V.30, H.31, I.34, W.40 Chain F: T.19, F.22, L.23, A.26, H.30, A.33, T.37, W.39 Chain G: Y.44, W.45 Ligands: RG1.7, BCL.20, BCL.21, RG1.25, BCL.27, RG1.29 9 PLIP interactions: 7 interactions with chain F, 2 interactions with chain E, Hydrophobic interactions: F:T.19, F:F.22, F:L.23, F:A.33, F:T.37, F:W.39, E:V.30, E:W.40 Metal complexes: F:H.30 BCL.27: 25 residues within 4Å: Chain E: I.6, G.15, A.18, L.19, S.22 Chain G: P.17, L.20, T.24, A.27, H.31, W.40, F.41, Y.44, W.45 Chain H: F.22, L.25, A.26, A.29, H.30 Ligands: RG1.7, BCL.21, BEN.23, BCL.24, RG1.25, BCL.30 13 PLIP interactions: 8 interactions with chain G, 2 interactions with chain H, 3 interactions with chain E, Hydrophobic interactions: G:P.17, G:L.20, G:W.40, G:F.41, G:F.41, G:Y.44, G:W.45, H:A.29, E:I.6, E:A.18, E:L.19 Metal complexes: G:H.31 Hydrogen bonds: H:H.30 BCL.28: 18 residues within 4Å: Chain G: M.1, N.2, Q.3 Chain H: V.15, I.16, T.19, R.20, L.23, A.26, L.27, H.30, W.39 Chain I: L.20 Chain J: G.18 Ligands: RG1.29, BCL.30, BCL.35, RG1.38 7 PLIP interactions: 7 interactions with chain H, Hydrophobic interactions: H:V.15, H:R.20, H:L.23, H:A.26, H:L.27, H:W.39 Hydrogen bonds: H:R.20 BCL.30: 25 residues within 4Å: Chain G: V.23, I.26, A.27, V.30, H.31, I.34, W.40 Chain H: T.19, F.22, L.23, A.26, H.30, A.33, T.37, W.39 Chain I: Y.44, W.45 Chain J: V.21, F.22 Ligands: BCL.27, BCL.28, RG1.29, RG1.32, BCL.35, RG1.38 13 PLIP interactions: 9 interactions with chain H, 2 interactions with chain J, 2 interactions with chain G, Hydrophobic interactions: H:T.19, H:F.22, H:L.23, H:A.33, H:T.37, H:W.39, H:W.39, H:W.39, J:V.21, J:F.22, G:V.30, G:W.40 Metal complexes: H:H.30 BCL.35: 24 residues within 4Å: Chain G: I.6, G.15, L.19, S.22 Chain I: P.17, L.20, T.24, A.27, H.31, W.40, F.41, Y.44, W.45 Chain J: F.22, L.25, A.26, A.29, H.30 Ligands: BCL.28, RG1.29, BCL.30, RG1.32, BEN.37, BCL.39 10 PLIP interactions: 7 interactions with chain I, 2 interactions with chain G, 1 interactions with chain J, Hydrophobic interactions: I:L.20, I:W.40, I:F.41, I:F.41, I:Y.44, I:W.45, G:I.6, G:L.19, J:A.29 Metal complexes: I:H.31 BCL.36: 17 residues within 4Å: Chain I: M.1, N.2, Q.3 Chain J: V.15, I.16, T.19, R.20, L.23, A.26, H.30, W.39 Chain K: L.20 Chain L: G.18 Ligands: RG1.31, RG1.38, BCL.39, BCL.44 6 PLIP interactions: 6 interactions with chain J, Hydrophobic interactions: J:V.15, J:R.20, J:L.23, J:A.26, J:W.39 Hydrogen bonds: J:R.20 BCL.39: 23 residues within 4Å: Chain I: V.23, I.26, A.27, V.30, H.31, I.34, W.40 Chain J: T.19, F.22, L.23, A.26, H.30, A.33, T.37, W.39 Chain K: Y.44, W.45 Ligands: RG1.31, BCL.35, BCL.36, RG1.38, RG1.40, BCL.44 9 PLIP interactions: 7 interactions with chain J, 2 interactions with chain I, Hydrophobic interactions: J:T.19, J:F.22, J:L.23, J:A.33, J:T.37, J:W.39, I:V.30, I:W.40 Metal complexes: J:H.30 BCL.44: 25 residues within 4Å: Chain I: I.6, G.15, A.18, L.19, S.22 Chain K: P.17, L.20, T.24, A.27, H.31, W.40, F.41, Y.44, W.45 Chain L: F.22, L.25, A.26, A.29, H.30 Ligands: BCL.36, RG1.38, BCL.39, RG1.40, BEN.46, BCL.48 12 PLIP interactions: 8 interactions with chain K, 1 interactions with chain L, 3 interactions with chain I, Hydrophobic interactions: K:P.17, K:L.20, K:W.40, K:F.41, K:F.41, K:Y.44, K:W.45, L:A.29, I:I.6, I:A.18, I:L.19 Metal complexes: K:H.31 BCL.45: 19 residues within 4Å: Chain K: M.1, N.2, Q.3 Chain L: V.15, I.16, T.19, R.20, L.23, A.26, L.27, H.30, W.39 Chain M: L.20 Chain N: G.18, V.21 Ligands: RG1.31, BCL.48, BCL.51, RG1.53 8 PLIP interactions: 7 interactions with chain L, 1 interactions with chain N, Hydrophobic interactions: L:V.15, L:R.20, L:L.23, L:A.26, L:L.27, L:W.39, N:V.21 Hydrogen bonds: L:R.20 BCL.48: 23 residues within 4Å: Chain K: V.23, I.26, A.27, V.30, H.31, I.34, W.40 Chain L: T.19, F.22, L.23, A.26, H.30, A.33, T.37, W.39 Chain M: Y.44, W.45 Ligands: RG1.31, BCL.44, BCL.45, RG1.49, BCL.51, RG1.53 9 PLIP interactions: 2 interactions with chain K, 7 interactions with chain L, Hydrophobic interactions: K:V.30, K:W.40, L:T.19, L:F.22, L:L.23, L:A.33, L:T.37, L:W.39 Metal complexes: L:H.30 BCL.51: 25 residues within 4Å: Chain K: I.6, G.15, A.18, L.19, S.22 Chain M: P.17, L.20, T.24, A.27, H.31, W.40, F.41, Y.44, W.45 Chain N: F.22, L.25, A.26, A.29, H.30 Ligands: RG1.31, BCL.45, BEN.47, BCL.48, RG1.49, BCL.54 13 PLIP interactions: 8 interactions with chain M, 2 interactions with chain N, 3 interactions with chain K, Hydrophobic interactions: M:P.17, M:L.20, M:W.40, M:F.41, M:F.41, M:Y.44, M:W.45, N:A.29, K:I.6, K:A.18, K:L.19 Metal complexes: M:H.31 Hydrogen bonds: N:H.30 BCL.52: 18 residues within 4Å: Chain M: M.1, N.2, Q.3 Chain N: V.15, I.16, T.19, R.20, L.23, A.26, L.27, H.30, W.39 Chain O: L.20 Chain P: G.18 Ligands: RG1.53, BCL.54, BCL.59, RG1.62 7 PLIP interactions: 7 interactions with chain N, Hydrophobic interactions: N:V.15, N:R.20, N:L.23, N:A.26, N:L.27, N:W.39 Hydrogen bonds: N:R.20 BCL.54: 25 residues within 4Å: Chain M: V.23, I.26, A.27, V.30, H.31, I.34, W.40 Chain N: T.19, F.22, L.23, A.26, H.30, A.33, T.37, W.39 Chain O: Y.44, W.45 Chain P: V.21, F.22 Ligands: BCL.51, BCL.52, RG1.53, RG1.56, BCL.59, RG1.62 13 PLIP interactions: 9 interactions with chain N, 2 interactions with chain M, 2 interactions with chain P, Hydrophobic interactions: N:T.19, N:F.22, N:L.23, N:A.33, N:T.37, N:W.39, N:W.39, N:W.39, M:V.30, M:W.40, P:V.21, P:F.22 Metal complexes: N:H.30 BCL.59: 24 residues within 4Å: Chain M: I.6, G.15, L.19, S.22 Chain O: P.17, L.20, T.24, A.27, H.31, W.40, F.41, Y.44, W.45 Chain P: F.22, L.25, A.26, A.29, H.30 Ligands: BCL.52, RG1.53, BCL.54, RG1.56, BEN.61, BCL.63 10 PLIP interactions: 7 interactions with chain O, 2 interactions with chain M, 1 interactions with chain P, Hydrophobic interactions: O:L.20, O:W.40, O:F.41, O:F.41, O:Y.44, O:W.45, M:I.6, M:L.19, P:A.29 Metal complexes: O:H.31 BCL.60: 17 residues within 4Å: Chain O: M.1, N.2, Q.3 Chain P: V.15, I.16, T.19, R.20, L.23, A.26, H.30, W.39 Chain Q: L.20 Chain R: G.18 Ligands: RG1.55, RG1.62, BCL.63, BCL.68 6 PLIP interactions: 6 interactions with chain P, Hydrophobic interactions: P:V.15, P:R.20, P:L.23, P:A.26, P:W.39 Hydrogen bonds: P:R.20 BCL.63: 23 residues within 4Å: Chain O: V.23, I.26, A.27, V.30, H.31, I.34, W.40 Chain P: T.19, F.22, L.23, A.26, H.30, A.33, T.37, W.39 Chain Q: Y.44, W.45 Ligands: RG1.55, BCL.59, BCL.60, RG1.62, RG1.64, BCL.68 9 PLIP interactions: 7 interactions with chain P, 2 interactions with chain O, Hydrophobic interactions: P:T.19, P:F.22, P:L.23, P:A.33, P:T.37, P:W.39, O:V.30, O:W.40 Metal complexes: P:H.30 BCL.68: 25 residues within 4Å: Chain O: I.6, G.15, A.18, L.19, S.22 Chain Q: P.17, L.20, T.24, A.27, H.31, W.40, F.41, Y.44, W.45 Chain R: F.22, L.25, A.26, A.29, H.30 Ligands: BCL.60, RG1.62, BCL.63, RG1.64, BEN.70, BCL.72 12 PLIP interactions: 8 interactions with chain Q, 1 interactions with chain R, 3 interactions with chain O, Hydrophobic interactions: Q:P.17, Q:L.20, Q:W.40, Q:F.41, Q:F.41, Q:Y.44, Q:W.45, R:A.29, O:I.6, O:A.18, O:L.19 Metal complexes: Q:H.31 BCL.69: 19 residues within 4Å: Chain A: L.20 Chain B: G.18, V.21 Chain Q: M.1, N.2, Q.3 Chain R: V.15, I.16, T.19, R.20, L.23, A.26, L.27, H.30, W.39 Ligands: BCL.3, RG1.5, RG1.55, BCL.72 8 PLIP interactions: 7 interactions with chain R, 1 interactions with chain B, Hydrophobic interactions: R:V.15, R:R.20, R:L.23, R:A.26, R:L.27, R:W.39, B:V.21 Hydrogen bonds: R:R.20 BCL.72: 23 residues within 4Å: Chain A: Y.44, W.45 Chain Q: V.23, I.26, A.27, V.30, H.31, I.34, W.40 Chain R: T.19, F.22, L.23, A.26, H.30, A.33, T.37, W.39 Ligands: RG1.1, BCL.3, RG1.5, RG1.55, BCL.68, BCL.69 9 PLIP interactions: 2 interactions with chain Q, 7 interactions with chain R, Hydrophobic interactions: Q:V.30, Q:W.40, R:T.19, R:F.22, R:L.23, R:A.33, R:T.37, R:W.39 Metal complexes: R:H.30

9 x BEN: BENZAMIDINE(Non-functional Binders)

BEN.13: 9 residues within 4Å: Chain A: S.22, V.25, I.26 Chain C: G.21, T.24, I.28 Ligands: BOG.9, BCL.11, BOG.66 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain C Hydrophobic interactions: A:V.25, A:I.26, C:T.24, C:I.28 BEN.22: 7 residues within 4Å: Chain C: S.22 Chain E: G.21, T.24, I.28 Ligands: BOG.9, BOG.17, BCL.20 2 PLIP interactions: 2 interactions with chain E Hydrophobic interactions: E:T.24, E:I.28 BEN.23: 8 residues within 4Å: Chain E: S.22, V.25 Chain G: G.21, T.24, I.28 Ligands: BOG.17, BOG.18, BCL.27 5 PLIP interactions: 3 interactions with chain G, 2 interactions with chain E Hydrophobic interactions: G:T.24, G:I.28, E:V.25 Hydrogen bonds: G:G.21, E:S.22 BEN.37: 9 residues within 4Å: Chain G: S.22, V.25, I.26 Chain I: G.21, T.24, I.28 Ligands: BOG.18, BOG.33, BCL.35 4 PLIP interactions: 2 interactions with chain I, 2 interactions with chain G Hydrophobic interactions: I:T.24, I:I.28, G:V.25, G:I.26 BEN.46: 7 residues within 4Å: Chain I: S.22 Chain K: G.21, T.24, I.28 Ligands: BOG.33, BOG.41, BCL.44 2 PLIP interactions: 2 interactions with chain K Hydrophobic interactions: K:T.24, K:I.28 BEN.47: 8 residues within 4Å: Chain K: S.22, V.25 Chain M: G.21, T.24, I.28 Ligands: BOG.41, BOG.42, BCL.51 5 PLIP interactions: 3 interactions with chain M, 2 interactions with chain K Hydrophobic interactions: M:T.24, M:I.28, K:V.25 Hydrogen bonds: M:G.21, K:S.22 BEN.61: 9 residues within 4Å: Chain M: S.22, V.25, I.26 Chain O: G.21, T.24, I.28 Ligands: BOG.42, BOG.57, BCL.59 4 PLIP interactions: 2 interactions with chain M, 2 interactions with chain O Hydrophobic interactions: M:V.25, M:I.26, O:T.24, O:I.28 BEN.70: 7 residues within 4Å: Chain O: S.22 Chain Q: G.21, T.24, I.28 Ligands: BOG.57, BOG.65, BCL.68 2 PLIP interactions: 2 interactions with chain Q Hydrophobic interactions: Q:T.24, Q:I.28 BEN.71: 8 residues within 4Å: Chain A: G.21, T.24, I.28 Chain Q: S.22, V.25 Ligands: BCL.3, BOG.65, BOG.66 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain Q Hydrophobic interactions: A:T.24, A:I.28, Q:V.25 Hydrogen bonds: A:G.21, Q:S.22

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Papiz, M.Z. et al., The structure and thermal motion of the B800-850 LH2 complex from Rps. acidophila at 2.0 A resolution and 100K : new structural features and functionally relevant motions. J.Mol.Biol. (2003)

Release Date

2003-02-25

Peptides

Light-harvesting protein B-800/850, alpha chain: ACEGIKMOQ
Light-harvesting protein B-800/850, beta chain: BDFHJLNPR

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

E
E

G
A

I
C

K
E

M
A

O
C

Q
E

B
B

D
D

F
F

H
B

J
D

L
F

N
B

P
D

R
F

Membrane

We predict this structure to be a membrane protein.
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Light-harvesting protein B-800/850, alpha chain

Light-harvesting protein B-800/850, beta chain

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