SMTL ID : 1nl0.1 (1 other biounit)

Crystal structure of human factor IX Gla domain in complex of an inhibitory antibody, 10C12

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 7 residues within 4Å: Chain A: E.84, V.109, G.111, Q.112, Y.144, K.170, N.174 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:E.84, A:G.111, A:Q.112, A:N.174 Water bridges: A:K.170, A:K.170 Salt bridges: A:K.170

6 x CA: CALCIUM ION(Non-covalent)

CA.2: 3 residues within 4Å: Chain C: E.26, E.30 Ligands: CA.3 No protein-ligand interaction detected (PLIP) CA.3: 4 residues within 4Å: Chain C: E.8, E.27, E.30 Ligands: CA.2 No protein-ligand interaction detected (PLIP) CA.4: 5 residues within 4Å: Chain C: E.8, E.17, E.27, E.30 Ligands: CA.5 No protein-ligand interaction detected (PLIP) CA.5: 8 residues within 4Å: Chain C: Y.1, N.2, E.7, E.8, E.17, E.27 Ligands: CA.4, CA.6 No protein-ligand interaction detected (PLIP) CA.6: 5 residues within 4Å: Chain C: Y.1, E.7, E.17, E.21 Ligands: CA.5 2 PLIP interactions: 1 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:Y.1, H2O.6 CA.7: 2 residues within 4Å: Chain C: E.15, E.20 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huang, M. et al., Crystal Structure of the Calcium-stabilized Human Factor IX Gla Domain Bound to a Conformation-specific Anti-factor IX Antibody. J.Biol.Chem. (2004)

Release Date

2004-01-20

Peptides

anti-factor IX antibody, 10C12, chain L: A
anti-factor IX antibody, 10C12, chain H: B
factor IX: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
H

C
G

anti-factor IX antibody, 10C12, chain L

anti-factor IX antibody, 10C12, chain H

factor IX

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