SMTL ID : 1nlm.1

CRYSTAL STRUCTURE OF MURG:GLCNAC COMPLEX

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-dimer

Ligands

2 x UD1: URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE(Non-covalent)

UD1.1: 20 residues within 4Å: Chain A: G.18, N.128, R.164, V.189, G.191, S.192, Q.218, F.244, I.245, M.248, G.263, A.264, L.265, T.266, E.269, F.282, Q.288, Q.289, N.292 Ligands: GOL.3 21 PLIP interactions: 21 interactions with chain A Hydrophobic interactions: A:V.189, A:F.244 Hydrogen bonds: A:N.128, A:R.164, A:S.192, A:I.245, A:I.245, A:A.264, A:L.265, A:T.266, A:T.266, A:E.269, A:Q.288, A:Q.288, A:Q.289, A:N.292 Water bridges: A:G.18, A:R.164, A:Q.193, A:Y.252, A:G.263 UD1.5: 18 residues within 4Å: Chain B: T.16, G.17, G.18, F.21, R.164, V.189, G.191, S.192, Q.193, Q.218, F.244, I.245, M.248, G.263, A.264, L.265, T.266, E.269 21 PLIP interactions: 21 interactions with chain B Hydrophobic interactions: B:V.189, B:F.244 Hydrogen bonds: B:T.16, B:G.18, B:R.164, B:S.192, B:S.192, B:S.192, B:I.245, B:I.245, B:L.265, B:T.266, B:T.266, B:E.269 Water bridges: B:R.164, B:G.191, B:Y.252, B:T.266, B:T.266, B:Q.289, B:Q.289

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 7 residues within 4Å: Chain A: F.149, G.160, N.161, S.268, A.271, A.337, I.339 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.161 Water bridges: A:A.272, A:I.339, A:I.339, A:I.339 GOL.3: 3 residues within 4Å: Chain A: F.21, R.164 Ligands: UD1.1 No protein-ligand interaction detected (PLIP) GOL.4: 4 residues within 4Å: Chain A: G.194, A.195, R.261, F.282 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.261 Water bridges: A:G.190, A:R.196 GOL.6: 5 residues within 4Å: Chain A: L.74, I.75, P.78 Chain B: W.116, S.117 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hu, Y. et al., Crystal structure of MurG:UDP-GlcNAc complex reveals common structural principles of a superfamily of glycosyltransferases. Proc.Natl.Acad.Sci.USA (2003)

Release Date

2003-02-11

Peptides

UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase

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