SMTL ID : 1nlt.1

The crystal structure of Hsp40 Ydj1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

monomer

Ligands

1 x GLY- TRP- LEU- TYR- GLU- ILE- SER: Seven residue peptide(Non-covalent)

GLY-TRP-LEU-TYR-GLU-ILE-SER.1: 10 residues within 4Å: Chain A: I.14, H.16, R.29, K.32, L.33, A.34, L.35, N.36, R.111, D.135 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:H.16, A:L.33, A:A.34, A:A.34, A:L.35 Hydrogen bonds: A:K.32, A:A.34, A:A.34, A:N.36, A:N.36, A:D.135 Water bridges: A:H.16, A:S.19, A:K.32, A:N.109 Salt bridges: A:R.29

2 x ZN: ZINC ION(Non-covalent)

ZN.2: 5 residues within 4Å: Chain A: C.41, E.43, C.44, C.99, C.102 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.41, A:C.44, A:C.99, A:C.102 ZN.3: 4 residues within 4Å: Chain A: C.57, C.60, C.83, C.86 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.57, A:C.60, A:C.83, A:C.86

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, J. et al., The crystal structure of the yeast Hsp40 Ydj1 complexed with its peptide substrate. Structure (2003)

Release Date

2004-01-13

Peptides

Mitochondrial protein import protein MAS5: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Mitochondrial protein import protein MAS5