SMTL ID : 1nm5.1

R. rubrum transhydrogenase (dI.Q132N)2(dIII)1 asymmetric complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

hetero-2-1-mer

Ligands

2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 19 residues within 4Å: Chain A: R.127, I.128, N.132, D.135, S.138, G.179, V.180, G.181, V.182, D.202, V.203, R.204, A.236, Q.247, T.264, A.265, L.266, P.273, L.275 21 PLIP interactions: 21 interactions with chain A Hydrogen bonds: A:I.128, A:I.128, A:N.132, A:G.179, A:V.180, A:V.182, A:V.203, A:R.204, A:R.204, A:R.204, A:Q.247, A:L.266, A:L.266 Water bridges: A:S.141, A:S.141, A:A.183, A:G.184, A:Q.210, A:Q.210 Salt bridges: A:R.127 pi-Cation interactions: A:R.127 NAD.2: 11 residues within 4Å: Chain B: G.179, G.181, V.182, D.202, V.203, R.204, T.264, A.265, L.266, P.273, L.275 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:V.182, B:V.203, B:R.204, B:L.266

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 6 residues within 4Å: Chain B: R.15, Q.75, H.99, E.296, N.322, P.324 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.15, B:H.99

1 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.4: 26 residues within 4Å: Chain B: N.132 Chain C: G.54, Y.55, G.56, V.59, A.60, V.87, A.88, G.89, R.90, M.91, P.92, G.129, A.130, N.131, D.132, V.133, K.164, R.165, S.166, S.169, G.170, Y.171, G.189, D.190, A.191 22 PLIP interactions: 21 interactions with chain C, 1 interactions with chain B Hydrogen bonds: C:Y.55, C:G.56, C:G.89, C:G.89, C:R.90, C:N.131, C:N.131, C:D.132, C:D.132, C:D.132, C:V.133, C:R.165, C:S.166, C:Y.171, C:D.190, C:D.190, C:A.191, B:S.129 Salt bridges: C:R.90, C:K.164, C:R.165 pi-Stacking: C:Y.171

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

van Boxel, G.I. et al., Glutamine 132 in the NAD(H)-binding component of proton-translocating transhydrogenase tethers the nucleotides before hydride transfer. Biochemistry (2003)

Release Date

2004-01-13

Peptides

NAD(P) transhydrogenase subunit alpha part 1: AB
NAD(P) transhydrogenase subunit beta: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

NAD(P) transhydrogenase subunit alpha part 1

NAD(P) transhydrogenase subunit beta

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